Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58690 577 / 0 Protein kinase superfamily protein (.1) AT1G54820 349 / 2e-117 Protein kinase superfamily protein (.1) AT1G61860 309 / 1e-102 Protein kinase superfamily protein (.1) AT5G13160 302 / 6e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 299 / 6e-99 Protein kinase superfamily protein (.1) AT3G07070 296 / 4e-97 Protein kinase superfamily protein (.1) AT5G02800 293 / 2e-96 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT4G02010 300 / 2e-95 Protein kinase superfamily protein (.1) AT5G18610 293 / 1e-94 Protein kinase superfamily protein (.1.2) AT3G24790 286 / 5e-94 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017647 [exp] 752 / 0 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10029948 [exp] 378 / 4e-128 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 370 / 5e-125 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10043050 [exp] 303 / 3e-100 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 302 / 9e-100 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 303 / 2e-99 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 298 / 2e-98 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040050 [exp] 296 / 2e-97 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10040350 [exp] 296 / 2e-97 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143100 [exp] 603 / 0 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 397 / 1e-136 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 369 / 3e-125 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 311 / 9e-104 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 310 / 3e-103 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 310 / 7e-102 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 301 / 1e-99 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 300 / 2e-99 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 299 / 7e-99 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 301 / 8e-99 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033606 pacid=23143389 polypeptide=Lus10033606 locus=Lus10033606.g ID=Lus10033606.BGIv1.0 annot-version=v1.0 ATGGAAGCCGATGACGATGATTACAGAAGGAAAGCTCGCCTTGCACTGCTGGCTGTCGTGGTGATCTCCTCCATGGCCATCTCTGCTCTGCTCGTCGCCT TTAGCTACTATTGCTACATTCGCAACAAGGTCTCCCGCCGCCTTGCTAGCCGCAAGAGGTTTGATAACGACGATGATGGTGGCTTTTCCGGTGTTGAAGT GACCACTGACAAAGGACTTCATGTGTTCACATTCAAGCAGCTTCATTCAGCAACTGATGGATTCAGCAAGTCGAACGTAGTAGGTCATGGTGGATTTGGC TCGGTCTATCGTGGTGTTCTTAGTAATGGAAGGAAAGTTGCAATTAAGGTCATGGATCAAGAAGGGAAGCAGGGAGAAGAAGAATTTGAAGTAGAGGTAG AATTGCTGAGTCGGCTGCGCTCCCCGTACTTGTTAGCGTTACTGGGGTATTGTTCGGGCAACAATCGTAAACTGCTAGTTTACGATTTCATGGCGAACGG TGGCTTGCAAGAACATTTGTATCCTCTCCCTGGATCCAATGCAACATACAGGAAGTTGGACTGGGAAACAAGGCTAAGAATTGCCCTAGAAGCTGCAAAG GGCTTGGAATATCTCCATGAGCACATTAGTCCTCCGGTCATTCACAGAGACTTCAAGAGCAGCAATATCCTCCTAGATAAAAGCTTCCACGCCAAAGTTT CCGATTTTGGATTAGCCAAGCTGGGACCCGACAGAGTTGGTGGGCATGTCTCCACTCGAGTCCTCGGCACTCAAGGATATGTTGCCCCCGAGTACGCATT AACAGGGCACTTGACAACAAAGTCAGACGTCTACAGCTATGGCGTAGTTCTGCTGGAATTGCTCACTGGCAGAGTTCCGGTCGACATGAAGAGACCATCT GGCGAAGGCGTTCTCGTATCTTGGGCGCTACCAAGGCTGACAGACAGAGATCAGGTTGTCCAGATAATGGATCCAACATTGGAAGGTCAGTACTCTATGA AAGAGGTTGTTCAAGTAGCAGCAATCGCGGCAATGTGTGTGCAAGCAGAGGCAGATTACAGGCCGCTGATGGCTGACGTGGTGCAGTCGTTAGTCCCACT GGTTCGATCGACTTCGAAGTTAGGAACTTGCTCTAGCTTCCATGCTCCCAAGTCTCCTCTGCCACAGGAAGTTGGTAGAGCAAGCGTTTAG
AA sequence Show only first row Show all	>Lus10033606 pacid=23143389 polypeptide=Lus10033606 locus=Lus10033606.g ID=Lus10033606.BGIv1.0 annot-version=v1.0 MEADDDDYRRKARLALLAVVVISSMAISALLVAFSYYCYIRNKVSRRLASRKRFDNDDDGGFSGVEVTTDKGLHVFTFKQLHSATDGFSKSNVVGHGGFG SVYRGVLSNGRKVAIKVMDQEGKQGEEEFEVEVELLSRLRSPYLLALLGYCSGNNRKLLVYDFMANGGLQEHLYPLPGSNATYRKLDWETRLRIALEAAK GLEYLHEHISPPVIHRDFKSSNILLDKSFHAKVSDFGLAKLGPDRVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPS GEGVLVSWALPRLTDRDQVVQIMDPTLEGQYSMKEVVQVAAIAAMCVQAEADYRPLMADVVQSLVPLVRSTSKLGTCSSFHAPKSPLPQEVGRASV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	0	1
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	1.0	0.9123
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	2.4	0.8676
AT1G49870			unknown protein		Lus10013902 [exp]	2.6	0.8312
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	3.2	0.8850
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	4.5	0.8261
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	4.9	0.8295
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	4.9	0.8176
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	5.5	0.8131
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10037576 [exp]	8.1	0.8160
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	10.2	0.8514

Compare expression of checked genes

Lus10033606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.