Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58640 1003 / 0 Mitogen activated protein kinase kinase kinase-related (.1.2) AT2G31010 555 / 0 Protein kinase superfamily protein (.1.2) AT2G42640 430 / 8e-139 Mitogen activated protein kinase kinase kinase-related (.1) AT1G73660 270 / 8e-77 protein tyrosine kinase family protein (.1) AT5G11850 260 / 3e-74 Protein kinase superfamily protein (.1) AT1G18160 261 / 6e-74 Protein kinase superfamily protein (.1) AT5G03730 256 / 3e-73 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G08720 251 / 6e-71 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT4G24480 241 / 4e-67 Protein kinase superfamily protein (.1) AT4G23050 236 / 1e-66 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017649 [exp] 696 / 0 AT3G58640 1040 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10029833 [exp] 627 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10020708 [exp] 618 / 0 AT3G58640 1020 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10023865 [exp] 261 / 9e-75 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 261 / 2e-74 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 259 / 2e-74 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 258 / 8e-73 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10009062 [exp] 254 / 2e-71 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 250 / 1e-70 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142700 [exp] 1147 / 0 AT3G58640 1174 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.002G214400 [exp] 1144 / 0 AT3G58640 1197 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.015G040100 [exp] 266 / 3e-75 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 259 / 3e-74 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G229400 [exp] 260 / 7e-74 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 259 / 1e-73 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 256 / 1e-72 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 256 / 2e-72 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 256 / 3e-72 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.002G111200 [exp] 253 / 2e-71 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10033608 pacid=23143541 polypeptide=Lus10033608 locus=Lus10033608.g ID=Lus10033608.BGIv1.0 annot-version=v1.0 ATGGAGGAGATGCGAGATGATTCAGGGTCAGCAGAGCAAGGGCCTTCTGGTGCAGCATGGTGGGGTTCTGATTTTATGGAGAAATTTGGCTCTGTTTCGA TGCATTCCCAAGAGGATACTTTGAGTAATAAAGAATCACCTCGAACTCATGAAGAAGATAGCTTATCTTCACAGACCGCGTCACAAGTTTTATGGAGCAC TGGAATGCTCTCTGAACCAATACCAAATGGCTTCTACTCTGTCCAACCTGATAAAAGACTCAAGGAGCATTTTGAGAGCCTTCCAACCCTGGATGAACTC CATGCTCTTGGAAATGAGGCTCTCAGGGCGGATGTAATTGTTGTAGATGCTAAGAAAGATAAGAAGCTATCAATGTTGAAGCAGTTAATTGTGACACTGG TGAGAGGTTTGAGTGCTAATCCTGCTTCTATGATAAAGAAGATTGCTGGACTGGTGTCTGACTTTCACAAAAGACCTAGTGTTGAAAGTCCTGCGAGATC TTGCGCAGAAGAAACTTATCACATGCTTCAGAACCGAGGTGTTCAATTACTTGGACAAATAAAGCATGGTTCATGCCGTCCTCGAGCTATTTTGTTCAAA GTTCTAGCAGACACTGTAGGTCTTGAAAGTAGGCTTGTGGTGGGTTTGCCAAATGACGGATCTGTTGAGTGTACAGACTCGTATAAGCACATGTCTGTGA TAGTTGTGTTGAATTCGGTGGAACTATTGGTAGATCTTATGCGTTTTCCTGGTCAGTTAATGCCACGGTCTACCCGAGCTATTTTCATGGCTCATATCTC AGCAGCTGGGGAGAGTGATTCGGCTGAAAATGATTCTTGTGATTCACCACTTGAACCAAATAGTCCTCTTTATCCTGACAGTTTATCGCATAGTGATCCC AATATCGCTGCAACATTTTGGCGCCGTAGCCGGAAAAAGGTGTTAGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCATCATTAAGGGTACGTG GAAGGTCTATGCTAGGTGGTGACAGGCACTCGATTAGAGATTATCCGGAGGATGTAGCCAGCTCAAGATCAGAGGGAGCATCAACGTCGTCAGCGACTCG TAGATTAAGAAGAAGAAGCATGAGCATGACCCCGGAGATTGGTGATGATATTGTCAGGGCTGTGCGTGCCATGAATGAAAGTATGAAGCAAAACCGTCTA GTGAGGGAGCAAGGAAATGGCACATTTTCTACTATTAACTCAAATGACAAGGACAGCCGATCAGATCTTCAAAATAATGTACGAAGTAGACTAGGAAGAA TTCAGCCAGTCGATAGCTTCACATGTACAATGGTGGGATGGATAGCAAACACAAGGCACATTGTTCACTCTATGGTTTTGCATTGGAATGAAATGGGACA AGTCATATTTTATGGTTTTCTGGCTTCATTCATTGTGACTGGCAGCCCTATCTATGCTTTGTTTCAGCTCTCTAGCAGAAAGCCTGCCTTGTCTGCTCTT CAGGTGGACCACAAAAACTCTCAGAAGGCAATGTCACTACCGTCCTCTCCACATGGATATAGCAGCCAAACGCTGGAGAGATATGGGCCTTCGAGCTCTT CGACAAATGATGAATTTGTCTCAATGTGGAATAAAATCCTTGAATCGCCCATGTTCGAGAATAAACCTCTGTTACCTTATGACGAATGGACTATTGACTT CTCAGAAATAAGTGTCGGAACTCGTGTTGGGATCGGTTTTTTCGGTGAAGTTTTTCGTGGTGTATGGAACGGAACAGAAGTTGCTATCAAAGTCTTCTTA GAGCAAGATCTAACAGCTGAAAACATGGAAGACTTTTGCAACGAAATATCCATTCTTAGTCGTCTGCGGCATCCTAATGTCCGTCAGTTGATTCATCCTG CTCTTGCAGTCATATTGTTTCTGGGTGCTTGCATAAAGCCTCCACGATTGTCAATGGTCACGGAGTACATGGAAATGGGATCCTTGTATTACCTGATCCA TATGAGTGGCCAGAAGAAGAAACTTAGTTGGCGGAGGCGGCTTAAAATGTTGCGTGATATATGCAGAGGGCTGATGTGTATACACCGGATGAACATAGTC CACCGCGATCTCAAGAGCGCAAATTGTCTGGTGAACAAGCATTGGACCGTAAAGATCTGCGATTTCGGCTTATCGAGAATCATGATGACAAAACCGGTCG TGGACTCGTCTTCAGCTGGAACCCCGGAATGGATGGCTCCTGAACTCATCCGCAGCGAACCTTTCACCGAGAAATGCGACATTTTCAGCCTTGGTGTTTT AATGTGGGAGCTCTGCACTCTCAACAGACCTTGGGAAGGAGTCCCTCCAGAAAGAGTCGTTTATGCTGTCGCGAACGAGGGATCGCGGCTGGATATCCCT GAAGGGCCTCTGGGAAGGCTGATTTCAGACTGTTGGGCGGAACCGGTTCAGCGGCCGAGCTGCGAAGAAATATTGTCCCGGTTGCTCGACTGCGAGTACT CCCTTTGCTGA
AA sequence Show only first row Show all	>Lus10033608 pacid=23143541 polypeptide=Lus10033608 locus=Lus10033608.g ID=Lus10033608.BGIv1.0 annot-version=v1.0 MEEMRDDSGSAEQGPSGAAWWGSDFMEKFGSVSMHSQEDTLSNKESPRTHEEDSLSSQTASQVLWSTGMLSEPIPNGFYSVQPDKRLKEHFESLPTLDEL HALGNEALRADVIVVDAKKDKKLSMLKQLIVTLVRGLSANPASMIKKIAGLVSDFHKRPSVESPARSCAEETYHMLQNRGVQLLGQIKHGSCRPRAILFK VLADTVGLESRLVVGLPNDGSVECTDSYKHMSVIVVLNSVELLVDLMRFPGQLMPRSTRAIFMAHISAAGESDSAENDSCDSPLEPNSPLYPDSLSHSDP NIAATFWRRSRKKVLAEQRTASSSPEHPSLRVRGRSMLGGDRHSIRDYPEDVASSRSEGASTSSATRRLRRRSMSMTPEIGDDIVRAVRAMNESMKQNRL VREQGNGTFSTINSNDKDSRSDLQNNVRSRLGRIQPVDSFTCTMVGWIANTRHIVHSMVLHWNEMGQVIFYGFLASFIVTGSPIYALFQLSSRKPALSAL QVDHKNSQKAMSLPSSPHGYSSQTLERYGPSSSSTNDEFVSMWNKILESPMFENKPLLPYDEWTIDFSEISVGTRVGIGFFGEVFRGVWNGTEVAIKVFL EQDLTAENMEDFCNEISILSRLRHPNVRQLIHPALAVILFLGACIKPPRLSMVTEYMEMGSLYYLIHMSGQKKKLSWRRRLKMLRDICRGLMCIHRMNIV HRDLKSANCLVNKHWTVKICDFGLSRIMMTKPVVDSSSAGTPEWMAPELIRSEPFTEKCDIFSLGVLMWELCTLNRPWEGVPPERVVYAVANEGSRLDIP EGPLGRLISDCWAEPVQRPSCEEILSRLLDCEYSLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	0	1
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	1.0	0.9183
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	2.0	0.9037
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	6.0	0.8726
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	8.2	0.8061
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	12.2	0.8515
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	12.7	0.8509
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	13.6	0.8679
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	13.9	0.7803
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	16.2	0.8492
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	18.4	0.8525

Compare expression of checked genes

Lus10033608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.