Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42590 389 / 3e-135 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G26480 377 / 2e-130 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 371 / 4e-128 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 359 / 2e-123 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT4G09000 345 / 6e-118 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G78300 342 / 1e-116 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G38480 338 / 2e-115 RCI1, GRF3 general regulatory factor 3 (.1.2) AT3G02520 337 / 1e-114 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT1G35160 334 / 2e-113 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G65430 331 / 1e-112 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017650 [exp] 467 / 8e-166 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 454 / 3e-160 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 439 / 2e-154 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 389 / 3e-135 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 385 / 5e-131 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 377 / 1e-130 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10004652 [exp] 369 / 3e-127 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10036471 [exp] 368 / 4e-127 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10026660 [exp] 367 / 2e-126 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110900 [exp] 404 / 3e-141 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 404 / 3e-141 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 387 / 2e-134 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 379 / 1e-131 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.008G095000 [exp] 378 / 9e-131 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 373 / 8e-129 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.004G101700 [exp] 344 / 2e-117 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 340 / 5e-116 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.002G099800 [exp] 337 / 5e-115 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 337 / 1e-114 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10033609 pacid=23143503 polypeptide=Lus10033609 locus=Lus10033609.g ID=Lus10033609.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGAGACCAATTCATCTACACTGCCAAGCTCGCCGAGCAAGCTGAACGCTACGAAGAAATGGTGGAAGCGATGAAGAATTTGGCGAAGCTAG ATGTGGAGCTGACAATCGAGGAGAGGAACTTGCTCTCTGTTGGCTACAAGAACGTGATCGGTGCTCGGAGAGCGTCGTGGAGGATTCTATCGTCCATTGA GCAGAAGGAAGAGTCGAGAGGGAACGAAGTGAATGCTAAGAGGATTAAGGAGTACAGGAACAAGGTCGAGAACGAGCTGACAGATATATGCAACGATGTC ATGGTTGTGATTGATGAGCATCTCATACCTGCTGCTCCTACTGGAGAATCCGCCATCTTCTACTACAAGATGAAGGGAGATTACTACAGGTATCTTGCTG AATTCAAGAGTGGGAATGAGAAGAAGGAAGCTGGCGAAAACTCGATGAAAGAAGAAGAAGCGAAAGCTACTACTTTGGCAGAGGCTGATTTACCTCCTAC ACACCCAATTAGACTGGGCTTGGCGTTGAATTTCTCGGTCTTCTACTACGAGATACTGAATTCTCCTGAAAGGGCCTGCCACCTTGCGAAACAAGCCTTT GATGAAGCCATCTCAGAACTCGACACTCTAAATGAGGAATCTTACAAGGACAGCACTTTGATAATGCAGCTTCTTAGAGACAACCTCACCTTGTGGACTT CTGACATACCTGATGATGGAGAAGATGCACAGAAGGTGAACGGCGGTGGCAAAGCCAGCGGAGCAGAAGAAGCTGAGATCCGAGCTCAAACTAAAGGTGA ACTCTTAAAAATTGGGTTTTTAGGTCGAGCTCAAGGGGTGCTAAACCAGAGCTGTAGATTTTTAAATTTGAGCCGAGCTCAACCTCGGATTGAACTCGAG ACCACCAAGAAAGAGCCACCAAGTCAAGCTCGGTCTAGCCGAACATGGTGCATGTGTTGCCACAAACAGATACGGAAGACCATGTTAGAAATTGTACCAA AAATAAGCTCAGTCTGGTTCTTAATGGCTGTGATTTTGGCGGAAGAAGAAAGAAGAAAATCTAACAATATAAAAGCCGAGATAGAACAACGTACCAACAC TCTTACCATGTTTCTCTGTACACAAGAAGAAGGAAATGGATTCTGTTTTTTTTTTCATTTTTCAGCAAAGGGAGTACTCGCAGTCGAGCAACCGGGACAA TATTTCTTCGCAGCTCGGCCGCTGAACCGGTTCCGCCCAACAGTCTGCCAAAATCAAGGACGAATACCTCGATTAAAGCGGCTTCCTATCGAATTTTCTT TAGATCGCTTTGCAAAAATTTCCATTTAA
AA sequence Show only first row Show all	>Lus10033609 pacid=23143503 polypeptide=Lus10033609 locus=Lus10033609.g ID=Lus10033609.BGIv1.0 annot-version=v1.0 MAERDQFIYTAKLAEQAERYEEMVEAMKNLAKLDVELTIEERNLLSVGYKNVIGARRASWRILSSIEQKEESRGNEVNAKRIKEYRNKVENELTDICNDV MVVIDEHLIPAAPTGESAIFYYKMKGDYYRYLAEFKSGNEKKEAGENSMKEEEAKATTLAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF DEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPDDGEDAQKVNGGGKASGAEEAEIRAQTKGELLKIGFLGRAQGVLNQSCRFLNLSRAQPRIELE TTKKEPPSQARSSRTWCMCCHKQIRKTMLEIVPKISSVWFLMAVILAEEERRKSNNIKAEIEQRTNTLTMFLCTQEEGNGFCFFFHFSAKGVLAVEQPGQ YFFAARPLNRFRPTVCQNQGRIPRLKRLPIEFSLDRFAKISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10033609 [exp]	0	1
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	6.0	0.8706
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	8.9	0.8736
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	13.2	0.8536
AT4G38640			Plasma-membrane choline transp...		Lus10025051 [exp]	15.4	0.8460
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	16.4	0.8585
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	19.3	0.8784
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	21.5	0.8814
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	22.6	0.8567
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	23.0	0.8685
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	23.5	0.8602

Compare expression of checked genes

Lus10033609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.