Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53310 1695 / 0 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 1686 / 0 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 1685 / 0 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 521 / 4e-169 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT3G42628 71 / 4e-15 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017653 [exp] 1944 / 0 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10020701 [exp] 1853 / 0 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 1853 / 0 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10035050 [exp] 525 / 4e-170 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 522 / 3e-169 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10000065 [exp] 390 / 3e-130 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 333 / 9e-109 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214100 [exp] 1738 / 0 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.011G110700 [exp] 1726 / 0 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 1724 / 0 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.010G131800 [exp] 517 / 4e-167 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.008G114200 [exp] 514 / 3e-166 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10033610 pacid=23143374 polypeptide=Lus10033610 locus=Lus10033610.g ID=Lus10033610.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCTCTGCCGAATCGCAACCACTTGGAGAAGACGACCTCCATTGACGCCCAGCTTCGCCTCTTAGCTCCCAGGAAAGTCTCCGAGGATGATA AGCTCGTCGAGTACGATGCTCTCTTGCTAGATCGCTTCCTCGACATCTTGCACGATTTGCACGGCGAGGACATCAGAGAAACGGTGCAAGAGTGTTATGA GCTATCAGCGGAGTACGAGAGGAAGCGAGATCCTCAGAAGCTGGAGGAGCTAGGGAAAGTGATAACGAGTTTGGATCCTGGAGATTCAATTGTGCTTTCG AAATCGTTCTCCAACATGCTTACTCTGGCCAATCTGGCCGAGGAGGTACAGATCGCGTACAGGAGGAGGATCAAGCTGAAGAAGGGGGATTTTGCTGACG AGAACTCGGCAACGACTGAATCGGATATTGAGGAGACGATTAAGAGGCTTACTGTTCAGTTGAAGAAGTCTCCTGAAGAAGTCTTTGATGCTCTGAAGAA CCAGACTGTGGATTTGGTCTTCACTGCTCATCCTACTCAGTCTGTCCGTAGGTCTTTGCTTCAGAAGCACGGGAGGATTCGTGACTGCTTGACTCAGTTG TATGCTAAGGACATTACTCCTGATGACAAACAGGAACTAGACGAGGCATTGCAGAGAGAGATCCAAGCTGCTTTCCGGACTGATGAGATTCGAAGGACAC CTCCTACTCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTCCATGAGACAATCTGGAAAGGAGTCCCTAAGTTCTTGCGCCGTGTCGACACAGCTTT GAAGAATCTTGGTATCAACGAACGCGTTCCTTACAATGCCCCTCTCATTCAGTTCTCTTCCTGGATGGGCGGTGATCGTGATGGAAATCCACGGGTGACT CCTGAAGTGACAAGGGATGTGTGCTTGTTGGCTAGAATGATGGCTGCTAACCTCTATTTCTCACAAATTGAGGATCTAATGTTTGAGATGTCCATGTGGC GCTGCAATGAAGAACTCCGTGTTCGTGCTGAAGAACTTCACAGGAATTCAAGGAAGGAGGCAAAACACTTCATAGAATTCTGGAAGAAGATCCCTCCAAA TGAGCCGTATAGGGTTCTTCTTGGCGATGTGAGGGACAAACTGTATAATACACGGGAACGTTCTCGACAGTTATTGTCTAGCAATACGTCCGATATTCCC GAGGAATCGACTTTTACCAATCTTGAGCAGTTTCTGGAGCCTCTTGAACTTTGCTACAGATCACTCTGTGCTTGTGGTGATCGTCCCATTGCTGATGGAA GCCTTCTTGATTTCTTACGTCAAGTTTCAACTTTCGGCCTTTCACTAGTTAGGCTAGACATTCGACAAGAATCCGATAGGCATACAGATGTGCTGAACGC CATTACAAATCATTTGGGCATTGGGTCGTATCGTGAATGGTCCGAGGAACAAAGACAGGAATGGCTCCTCTCAGAGCTCTGTGGCAAGCGCCCTCTTTTC GGTCCAGATCTTCCCAAAACCGAAGAAATTGCTGACGTGTTGGACACTCTACACGTCATTGCCGAGCTCCCGGCTGACAGTTTCGGTGCATACATTATAT CGATGGCTACAGCTCCATCCGATGTACTTGCTGTCGAACTTCTGCAACGAGAATGCCACGTGAAGCAACCATTGAGGGTTGTTCCTTTATTCGAGAAGCT TGCTGATCTCGAAGCTGCTCCTGCTGCAGTGGCTCGTCTATTCTCGATCGACTGGTATAAGAACCGAATCAACGGCAAGCAAGAAGTTATGATAGGGTAC TCAGACTCCGGCAAGGATGCCGGGCGTTTCTCCGCTGCTTGGCAGTTATACAAGGCTCAAGAAGAGCTTGTCAAGGTGGCAAAGGAATATGGTGTTAAGC TTACTATGTTCCATGGCCGTGGAGGAACAGTCGGAAGAGGCGGAGGTCCGACCCATCTTGCCATACTGTCTCAACCACCGGACACCGTTCATGGATCACT CCGAGTCACGGTTCAAGGAGAGGTCATTGAGAAGTCCTTTGGTGAAGAACATTTGTGCTTCAGGACACTCCAACGGTTTACTGCTGCTACACTTGAGCAT GGAATGCATCCTCCTGTATCCCCGAAGCCGGAATGGCGTGCACTCATGGATGAAATGGCTGTTATCTCCACAAAAGAATACCGGTCTATCGTCTTCCAGG AGCCTCGTTTCGTCGAATACTTCCGCCTTGCAACACCGGAGCTGGAGTACGGTCGTATGAACATTGGGAGTAGGCCGTCGAAGAGAAAGCCAAGTGGAGG GATAGAATCGCTGCGTGCAATCCCGTGGATTTTCGCCTGGACACAGACGAGATTCCATTTACCAGTATGGCTCGGCTTCGGTGCTGCTTTCAAGCATGTT ATCGACAAGGATATCAAAAACCTCAAAATGCTTCAAGATATGTACAACCAGTGGCCGTTCTTCCGAGTCACGATTGATCTGGTCGAAATGGTTTTCGCCA AGGGCGATCCAGAGATTGCTGCTCTGTACGACAAGCTCCTCGTGTCACCAGAATTGCGTCCATTTGGTGACCAGTTGAGATCCAAGTACCTTCAAACTAA GGACTTCCTCCTCCAGATTGCTGGCCACAAAGAAGTTCTGGAAGGAGACCCATACCTGAAGCAGAGGCTTCGTCTCCGAGATGCATATATCACAACCCTC AACGTCTCCCAAGCTTACACCCTGAAGCGTGTTCGAGACCCTGACTACCACGTGGCCCTGAGGCCCCACCTGTCAAAGGAATACAACGACGGGATGAAGC CTGCTGCTGAGCTGTTGAAGCTTAACCCGACTAGCGAGTATGCTCCCGGCCTGGAAGATACCCTCATTTTGACCATGAAAGGTATCGCCGCCGGCCTTCA AAACACAGGCTAA
AA sequence Show only first row Show all	>Lus10033610 pacid=23143374 polypeptide=Lus10033610 locus=Lus10033610.g ID=Lus10033610.BGIv1.0 annot-version=v1.0 MAAPLPNRNHLEKTTSIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILHDLHGEDIRETVQECYELSAEYERKRDPQKLEELGKVITSLDPGDSIVLS KSFSNMLTLANLAEEVQIAYRRRIKLKKGDFADENSATTESDIEETIKRLTVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLTQL YAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGNPRVT PEVTRDVCLLARMMAANLYFSQIEDLMFEMSMWRCNEELRVRAEELHRNSRKEAKHFIEFWKKIPPNEPYRVLLGDVRDKLYNTRERSRQLLSSNTSDIP EESTFTNLEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLNAITNHLGIGSYREWSEEQRQEWLLSELCGKRPLF GPDLPKTEEIADVLDTLHVIAELPADSFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYKNRINGKQEVMIGY SDSGKDAGRFSAAWQLYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTVHGSLRVTVQGEVIEKSFGEEHLCFRTLQRFTAATLEH GMHPPVSPKPEWRALMDEMAVISTKEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHV IDKDIKNLKMLQDMYNQWPFFRVTIDLVEMVFAKGDPEIAALYDKLLVSPELRPFGDQLRSKYLQTKDFLLQIAGHKEVLEGDPYLKQRLRLRDAYITTL NVSQAYTLKRVRDPDYHVALRPHLSKEYNDGMKPAAELLKLNPTSEYAPGLEDTLILTMKGIAAGLQNTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	0	1
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	2.8	0.8225
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	4.0	0.8001
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	7.1	0.7967
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	10.2	0.7726
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	15.8	0.7001
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	17.7	0.7942
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	23.0	0.7453
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	24.0	0.6901
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	28.4	0.7604
AT2G35700	AP2_ERF	ATERF38	ERF family protein 38 (.1)		Lus10004738 [exp]	30.5	0.7212

Compare expression of checked genes

Lus10033610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.