Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23360 48 / 3e-06 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT3G63410 43 / 0.0002 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017673 [exp] 653 / 0 AT1G23360 45 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 49 / 2e-06 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 49 / 2e-06 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10014711 [exp] 45 / 7e-05 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089700 [exp] 483 / 1e-171 AT3G18000 53 / 2e-07 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 47 / 1e-05 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.002G095100 [exp] 44 / 0.0001 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G263700 [exp] 43 / 0.0003 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G165700 [exp] 42 / 0.0007 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 41 / 0.0009 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033614 pacid=23143423 polypeptide=Lus10033614 locus=Lus10033614.g ID=Lus10033614.BGIv1.0 annot-version=v1.0 ATGGCGTTTTCTTCCCAATCCCACAATTACGTCTCTACCTTCCTCCCCTCCACCTCCAATGGAGGAACAAGAAGAAGAAGAGCAGCATCTGGGTCAGTTT CCGTTCATTGTAAGATGGCAAATCCAACGAAAACAGAGTACGAAGAAGGGAAGCTGGAGATGCCGAAATGGGCAGGGGAGACTCCTCTGTCTCGATTGGT GGGAGCCATGGTTTCCTTCAAGCCTCTCTACTCCCTCCTCAAGCTCGGAGCTCGTCAGGTCCTCATCAGCACTGCTGAGAAGAGGAACATTCAATGGCGA GAGATGACTAGGGAAATTCTCGAATCCGATGTTTACAAGGAGATGGACTCAATCATCAACCCTTCCCTCCAGTACCCAGATTATTACCTAAGCCCTTTCC ATGCATATGATGAAGGAAACCTTTCATGGCTGGCTGCAGCAGAAGCAGAACCAGCAACAATGTCGATGGTGTTTCGAGCAGTACCGACTGCTTCATCTGT AGAGGAAGCCAACGAGATCGTCCGAGGGAACTGGCTTCGGGCTATCGAACAGCAGCATCAACAGCACTCGGGCCGGGGTGGTTCGAGTGTTTGCGACATT CTTGATGTTGGATGCTCTGTTGGTGTCAGCACCAGGTTCCTTGCTGACAAGTTCCCTTCTGCAAATGTCACTGGTCTGGATCTGTCTCCTTACTTCCTGG CTGTAGCACAATTCAAGGAGAAGAAGAGCAAAACCCCAAGGAAGAACATAGTTGGATGGATCCATGCCAATGGGGAGGATACAGGCTTGCCTAACGAATC ATTCGATGTCGTCTCGATTTCTCTTGTGTTTCATGAATGCCCTGAACGAGCAATAGTCGCGATGGTGAATGAAGCGTTCAGGGTGCTTCGGCCCGGAGGA ACCATTGCACTGATGGATCAAGCTCCCAAGTCAAAGACCCTTCAGGAACTGTCTCCAGTACTGTTTACACTGTTGAAGAGCACAGAGCCATATCTGGATG AGTTCTACCTGACTGACCTGAACGGGACTCTCAAGGAAGCTGGATTCGTCAACATTCAGACTGTTCTAAGTGACTCCAGACATATGACTATGACTGCAAC CGTGCCACCTCGTTAG
AA sequence Show only first row Show all	>Lus10033614 pacid=23143423 polypeptide=Lus10033614 locus=Lus10033614.g ID=Lus10033614.BGIv1.0 annot-version=v1.0 MAFSSQSHNYVSTFLPSTSNGGTRRRRAASGSVSVHCKMANPTKTEYEEGKLEMPKWAGETPLSRLVGAMVSFKPLYSLLKLGARQVLISTAEKRNIQWR EMTREILESDVYKEMDSIINPSLQYPDYYLSPFHAYDEGNLSWLAAAEAEPATMSMVFRAVPTASSVEEANEIVRGNWLRAIEQQHQQHSGRGGSSVCDI LDVGCSVGVSTRFLADKFPSANVTGLDLSPYFLAVAQFKEKKSKTPRKNIVGWIHANGEDTGLPNESFDVVSISLVFHECPERAIVAMVNEAFRVLRPGG TIALMDQAPKSKTLQELSPVLFTLLKSTEPYLDEFYLTDLNGTLKEAGFVNIQTVLSDSRHMTMTATVPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	1.4	0.9571
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	2.0	0.9472
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	3.9	0.9491
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	4.9	0.9439
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	5.8	0.9314
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	5.8	0.9506
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	6.3	0.9417
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	7.9	0.9408
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	8.4	0.9469
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	10.6	0.9316

Compare expression of checked genes

Lus10033614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.