Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 100 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017672 [exp] 609 / 0 AT2G31130 100 / 4e-23 unknown protein Lus10013926 [exp] 68 / 1e-12 AT2G31130 68 / 1e-12 unknown protein Lus10000990 [exp] 67 / 3e-12 AT2G31130 70 / 3e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089900 [exp] 152 / 6e-42 AT2G31130 84 / 1e-17 unknown protein Potri.013G118000 [exp] 127 / 7e-33 AT2G31130 85 / 8e-18 unknown protein Potri.001G376800 [exp] 79 / 8e-16 AT1G17780 82 / 3e-17 unknown protein Potri.011G065100 [exp] 54 / 4e-08 AT2G31130 63 / 8e-11 unknown protein Potri.004G055300 [exp] 53 / 1e-07 AT2G31130 66 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033615 pacid=23143494 polypeptide=Lus10033615 locus=Lus10033615.g ID=Lus10033615.BGIv1.0 annot-version=v1.0 ATGGACCTGAAAGGCATCACATGGGTTGGGGATGTCTATCAGAAGTTTGAAGCTATGTGTTTGGAAGTAGAAGAAACTATGTATGAGGACACGGTTAAAT TCGTCGAGAATCAGGTCCAGACTGTTGGCGCTAGCATGAAGAAGTTCTATGCAGAGGTGATGCAAGATTTGGTGCAGCCAACCTCTGAAGATTCTGCAAA AGCAACGACCTTTGATCAGTCTGCGGAGCTGCACACTGATCTTGGGATATACTTGAACCCCAAATCGACGGTGAAGGAAAACCGTCTAAAGAGTGATAAT AAGGAACAATTGAGCGAGTCTCGAAAAACTTCCGGTGCGAAAAGTTCAGACCTTTCGGCCGCCTTCCTTTGTCATGTGGATAATTGGTTTCCCCTTGCGC AAGAAAACTCGGCCAAAGGTGCGCTAGAGAAATATACTAAAGGAAGCCTGTCAAAGAAGTCTGGTTTGGGAATCAGCAAGGTGCCGTTGCTAGCCTCTCC TCTAACTAAAACGCGAGAAATATCGTTTGATCAGCAAGCTAGACTTGCAACTTCAAGTTCTGGACGTATAGAAGAAAGCGAAGCGGATACAGTTGACCCC AAACCATTGGTTCCTGCTTGTTCAACTGCTGATATGTTATCTAATAAAGCCATGTCCCTCGAGTCAGGGAGTTTCGAACAAGTGGATGCAGAACATCCTT GCTCTAGCAACTCTTTAGCAGAATCGAATCGCAGCCATGTTTCCGAGGATGCATCCTCGGCAAAAGCAAGTGAACTTTCTGGGAAATTTGCTTATACTGA GGACTACACTTCTACCTCAGAAAGGTCGAGTGACTGGGATATAGATATGATCATAGATAACTGTTGCCCCGATCAGGAGCGAAAAACTGACCATGCAAAG CTTGGAGATGGTACTTTAGATCAACAAATGGCGAGTGATCAGCGGCAAGCTGACCAGGTCTTGCTCGAGGAATCATGCATTGTCGTCAGCGAAGATGATG AGTTCGATTTCATTTCTCACTGTGAAGGAAAAAGCTCTAAATACAAGGATGTTTTTTCGCCACGAAGAATGTCATCAAGGAAGCAGAGAAGTTCAGCATC AGCTTTAACTGGAGCAGGAGTTGCAAAGCTCGAGTCTTGCAATCCCGAGTGGGAGCTGGTTTAG
AA sequence Show only first row Show all	>Lus10033615 pacid=23143494 polypeptide=Lus10033615 locus=Lus10033615.g ID=Lus10033615.BGIv1.0 annot-version=v1.0 MDLKGITWVGDVYQKFEAMCLEVEETMYEDTVKFVENQVQTVGASMKKFYAEVMQDLVQPTSEDSAKATTFDQSAELHTDLGIYLNPKSTVKENRLKSDN KEQLSESRKTSGAKSSDLSAAFLCHVDNWFPLAQENSAKGALEKYTKGSLSKKSGLGISKVPLLASPLTKTREISFDQQARLATSSSGRIEESEADTVDP KPLVPACSTADMLSNKAMSLESGSFEQVDAEHPCSSNSLAESNRSHVSEDASSAKASELSGKFAYTEDYTSTSERSSDWDIDMIIDNCCPDQERKTDHAK LGDGTLDQQMASDQRQADQVLLEESCIVVSEDDEFDFISHCEGKSSKYKDVFSPRRMSSRKQRSSASALTGAGVAKLESCNPEWELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31130			unknown protein		Lus10033615 [exp]	0	1
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	15.7	0.8599
AT3G61800			unknown protein		Lus10004000 [exp]	21.3	0.8543
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	22.3	0.8577
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	25.5	0.8576
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	51.4	0.8328
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	52.4	0.8291
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	60.5	0.7934
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	61.5	0.8329
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	64.1	0.8331
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	74.4	0.8208

Compare expression of checked genes

Lus10033615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.