Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30900 84 / 3e-20 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G62390 84 / 3e-20 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 84 / 5e-20 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 82 / 2e-19 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G54260 81 / 4e-19 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT1G29050 81 / 5e-19 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT5G01360 81 / 6e-19 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G49340 79 / 2e-18 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT1G78710 74 / 9e-17 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G20590 74 / 2e-16 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017671 [exp] 203 / 2e-65 AT3G62390 270 / 7e-86 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10027637 [exp] 89 / 1e-21 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10011932 [exp] 88 / 1e-21 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10007367 [exp] 77 / 5e-19 AT2G30900 166 / 4e-51 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10020786 [exp] 79 / 6e-19 AT2G30900 298 / 1e-100 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10021066 [exp] 81 / 9e-19 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10015309 [exp] 80 / 9e-19 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10000466 [exp] 77 / 1e-18 AT2G31110 291 / 4e-101 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10024176 [exp] 76 / 2e-17 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090000 [exp] 115 / 8e-32 AT3G12060 290 / 3e-92 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 85 / 2e-20 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 84 / 4e-20 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.003G201600 [exp] 82 / 1e-19 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.002G195800 [exp] 82 / 2e-19 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.011G064700 [exp] 76 / 1e-17 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.T171301 [exp] 76 / 2e-17 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 76 / 2e-17 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.004G055000 [exp] 75 / 5e-17 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G010900 [exp] 74 / 1e-16 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10033616 pacid=23143261 polypeptide=Lus10033616 locus=Lus10033616.g ID=Lus10033616.BGIv1.0 annot-version=v1.0 ATGGAGATCAAGTCAGCATTCCAGGAGGCCATGACAACTTGGGCTAAGTGGATTGATCAAAATGTAGACTCAGCCAAAACAAGCATATACTTTCGAAGCA TATCGCCCGAGCATACAGGGAATCAAGAGTGCTTCGGTTCAAAAGAACCGATCAAAGACGACGAAGAATCTCTCGAACCCAGTTTCCCTCCTGAGATGAC TGATATAGTCACAGAAACAATTAAAGGGATGAAGACACAGGTAAGGTACCCCAACATCACACAGATGTCCCGGTACCGAATAGATGCACACCCTGCAGTT TATGCTCATAAGGAAAACGGGGATTCGATCTGA
AA sequence Show only first row Show all	>Lus10033616 pacid=23143261 polypeptide=Lus10033616 locus=Lus10033616.g ID=Lus10033616.BGIv1.0 annot-version=v1.0 MEIKSAFQEAMTTWAKWIDQNVDSAKTSIYFRSISPEHTGNQECFGSKEPIKDDEESLEPSFPPEMTDIVTETIKGMKTQVRYPNITQMSRYRIDAHPAV YAHKENGDSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	0	1
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	1.7	0.7938
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	2.4	0.7979
AT1G15170			MATE efflux family protein (.1...		Lus10042732 [exp]	2.8	0.7917
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	3.2	0.7661
					Lus10016118 [exp]	3.5	0.7979
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	6.5	0.7653
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	6.5	0.7288
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	7.3	0.7153
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	10.2	0.7229
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	11.0	0.6123

Compare expression of checked genes

Lus10033616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.