Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 476 / 2e-169 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 428 / 3e-150 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 427 / 1e-149 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 409 / 2e-142 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G78710 370 / 2e-127 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT3G14850 370 / 2e-127 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G30900 353 / 8e-121 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 331 / 2e-111 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 323 / 2e-108 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 287 / 1e-94 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002198 [exp] 543 / 0 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 427 / 5e-150 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 426 / 3e-149 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 402 / 5e-140 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10000466 [exp] 322 / 9e-111 AT2G31110 291 / 4e-101 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10039559 [exp] 324 / 3e-109 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 323 / 2e-108 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009209 [exp] 322 / 2e-108 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10024176 [exp] 319 / 1e-106 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 519 / 0 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 509 / 0 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 449 / 1e-158 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 432 / 6e-152 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 392 / 3e-136 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 370 / 2e-127 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 369 / 2e-127 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G106300 [exp] 365 / 7e-126 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.003G201600 [exp] 362 / 3e-124 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 354 / 3e-121 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10033617 pacid=23143346 polypeptide=Lus10033617 locus=Lus10033617.g ID=Lus10033617.BGIv1.0 annot-version=v1.0 ATGGGTTTCTTCACATTTGTTCTTGCTCTCCTATTTCTAGCACAAACAACCACCTGCAGCAGCATCACTCCTAACAGCAGCAGCAGCAGCAGCAGCAGCA GAAGAGAAGCATTAGGAGTCAGCAAATGCAACTGGTTCCAAGGAAAATGGGTCTACGACGCTTCTTACCCACTCTACGACTCTTCGAAATGCCCGTTCCT CGATCCCAAATTCGACTGCTCCAAATCAGGCCGACCAGACAACAGCTACTCCAAGTACAGATGGCAGCCCTTCGCCTGCAATCTCCCCAGGTTTAATGGG TTGAATTTGCTGGAGAAATGGAGAGGGAAGAAGATAATGTTTGTGGGGGACTCATTGAGCTTGAACCAGTGGGAATCTCTGGCTTGTATGATCCATTCAT GGGTACCAAATGCAAGATATTCCCTCGTCAGGACTGAAAGCCTTTCCTCTGTCACATTTCTGGAATATGGAGTGAAGATATTACTGTACAGGACACCATA TTTGGTGGATCTGGTCAACGACAAGAAATCAGGCAATACGATTCTTAAACTTGACTCCATCTCCTACGGCAGATCCTGGCGTGGTATGGACGTCTTGATC TTCAACTCCTGGCACTGGTGGACTCACTCCGGCAGATCTCAGCCATGGAATTACATACAAGAAGGGAACAAGATGTACAAAGACATGAACAGGCTAATTG CATACTACAAAGGATTGACAACTTGGGCTAGATGGGTCAACCGCTATGTCGACCCTTCCAAGACCAAAGTCTTCTTCCAAGACATCTCCCCGTCTCACGA CTATGGCAGTGACTGGAACCAGCCGTCACAGACATGTTCAGGGCAGACGCTGCCCTTCGTCGGAACCAGGTATCCGGCGGGAACGCCACAGGCATGGGCG GTAGTTAACAAGGTCATGAAGAGGATGAAGAAGCCTGTTTACCTTCTCGACATCACCGGCATGTCTCTCTACAGGAAAGATGCTCATCCGGGCTCGTACA GTCAAAACGGCGCCAATGACTGTAGCCATTGGTGCCTCCCTGGACTCCCTGATACTTGGAACATACTGCTCTACTCAGTTTATGTTAGTTAA
AA sequence Show only first row Show all	>Lus10033617 pacid=23143346 polypeptide=Lus10033617 locus=Lus10033617.g ID=Lus10033617.BGIv1.0 annot-version=v1.0 MGFFTFVLALLFLAQTTTCSSITPNSSSSSSSSRREALGVSKCNWFQGKWVYDASYPLYDSSKCPFLDPKFDCSKSGRPDNSYSKYRWQPFACNLPRFNG LNLLEKWRGKKIMFVGDSLSLNQWESLACMIHSWVPNARYSLVRTESLSSVTFLEYGVKILLYRTPYLVDLVNDKKSGNTILKLDSISYGRSWRGMDVLI FNSWHWWTHSGRSQPWNYIQEGNKMYKDMNRLIAYYKGLTTWARWVNRYVDPSKTKVFFQDISPSHDYGSDWNQPSQTCSGQTLPFVGTRYPAGTPQAWA VVNKVMKRMKKPVYLLDITGMSLYRKDAHPGSYSQNGANDCSHWCLPGLPDTWNILLYSVYVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10033617 [exp]	0	1
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	6.9	0.9439
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10022684 [exp]	7.3	0.9203
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	7.9	0.9312
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	13.4	0.9250
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	13.4	0.9309
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	15.2	0.9280
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	16.0	0.9084
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	19.7	0.9272
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	23.2	0.9205
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	25.9	0.9222

Compare expression of checked genes

Lus10033617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.