Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49010 254 / 4e-86 EMB2812, SLD5 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017669 [exp] 443 / 1e-160 AT5G49010 259 / 4e-88 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103800 [exp] 372 / 1e-132 AT5G49010 277 / 2e-95 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2) Potri.010G147050 [exp] 227 / 8e-76 AT5G49010 162 / 2e-50 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10033618 pacid=23143446 polypeptide=Lus10033618 locus=Lus10033618.g ID=Lus10033618.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTAGCTCCACCCCGGATTTAGGGTCGGCGGCCTTCGTCGACGATTACGAGACGTTGATATCCACCACCGACGTAGAGCTCTTGAAGTGCT CATGGAGAAACGAGAAAGCTGCGCCGGAGATTCTTGCTTACGAAGCTGCTTTGGTTCACAGGATCAAAGAGCAAATTGAATTGGCGGAGCAAAATGTGGA GGTTTCTGAAGGAAATGGGGAAGATCGACTCACTATATCACTTTACCAGATGGATTTGGACAGGACTCAGTTTCTGCTGCGATCGTATCTCCGAGTCCGC CTCCAGAAGATTGAGAAGCATCTCTTCCACATTTTGAAGACTGACGAGTCCTTTAATTGCCTTTCTAAGCTGGAGCAAGCTTTTGCTAAGAGGTGCACAG ACGATCTGGGAGCTCATCTTAAAGAGACGGTTCTCTCGAAATTGCCAGACAATTATCAGTCCGAGCTAAAACAATCCATAACCAGCGAAGAGGATGACAT GGTGTCAGCACCGCGACTGGATTCGTTCGTCATCTGCAAAGCGAAGCAGTATCTTTCTGGACTCGATTTCGAGCCGGAATACAGCACGGAGATAGCAGAG ATGGAGCGAGATCTACTTACCTTTGTGTGCTACAAGTTCATCAAGAAGCCTTTCGAGAACGGCAAGATTGATCTAGTTTGA
AA sequence Show only first row Show all	>Lus10033618 pacid=23143446 polypeptide=Lus10033618 locus=Lus10033618.g ID=Lus10033618.BGIv1.0 annot-version=v1.0 MAASSSTPDLGSAAFVDDYETLISTTDVELLKCSWRNEKAAPEILAYEAALVHRIKEQIELAEQNVEVSEGNGEDRLTISLYQMDLDRTQFLLRSYLRVR LQKIEKHLFHILKTDESFNCLSKLEQAFAKRCTDDLGAHLKETVLSKLPDNYQSELKQSITSEEDDMVSAPRLDSFVICKAKQYLSGLDFEPEYSTEIAE MERDLLTFVCYKFIKKPFENGKIDLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	0	1
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	3.3	0.8649
AT3G18510			unknown protein		Lus10042971 [exp]	4.2	0.8260
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	4.5	0.8246
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	5.3	0.8487
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	9.5	0.8147
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	12.0	0.7952
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	13.5	0.7664
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	15.5	0.7658
AT5G48970			Mitochondrial substrate carrie...		Lus10037508 [exp]	16.1	0.7837
AT5G27260			unknown protein		Lus10037335 [exp]	20.0	0.7628

Compare expression of checked genes

Lus10033618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.