Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06240 226 / 5e-71 Protein of unknown function DUF455 (.1) AT5G04520 66 / 3e-12 Protein of unknown function DUF455 (.1) AT2G31090 42 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017666 [exp] 331 / 4e-112 AT1G06240 489 / 1e-173 Protein of unknown function DUF455 (.1) Lus10028831 [exp] 68 / 1e-12 AT5G04520 475 / 6e-171 Protein of unknown function DUF455 (.1) Lus10017450 [exp] 59 / 1e-09 AT5G04520 351 / 6e-123 Protein of unknown function DUF455 (.1) Lus10017667 [exp] 51 / 2e-08 AT2G31090 110 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090600 [exp] 261 / 7e-85 AT1G06240 436 / 1e-152 Protein of unknown function DUF455 (.1) Potri.010G233000 [exp] 67 / 2e-12 AT5G04520 491 / 5e-177 Protein of unknown function DUF455 (.1) Potri.019G090500 [exp] 50 / 6e-08 AT2G31090 42 / 8e-07 unknown protein Potri.011G063900 [exp] 39 / 0.0006 AT2G31090 59 / 3e-13 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF04305 [flax] [poplar] DUF455 Protein of unknown function (DUF455)
Representative CDS sequence Show only first row Show all	>Lus10033620 pacid=23143238 polypeptide=Lus10033620 locus=Lus10033620.g ID=Lus10033620.BGIv1.0 annot-version=v1.0 ATGCGCTTTATCCCACGCGCCACCGTCCTTTCTTCTCCATTCTCCACCGCCGAATACTCCCCATGGTCATGTCTCCACTCATGGCGACAATCTCCGTTCA ACGAGGACCATCTCTGGGGACCTACCAGCCCTCACCCTCCTCCCTCCTCTTCCTTCACCGCTACACCTCCAACCCTCCCCGCCGCATCCTCCCTCGCTGA GCTCGGCGCAATAGTCCTCTCAACCGCCGACCCGCTCACCAAATCCGAAACCCTTCCTATCGGACAACGCCATATAACCCCGCCGGATCGTCCGGCTCGC CCTCCTCTGCCGCAGCTGGTCTCTCCCTGGGAGATTCCAGCTCCTAAAGATTCCGGATTGCCTCTCAATGCTTACATGCTCCACAATCTGGCTCACGTGG AGCTCAACGCCATCGATGTGGCGTGGGACACTGTTGTCCGGTTTTCTCCCTTTGCTGATGTTCTTGGCCAAGGCTTCTTTGCTGACTTTGCTAAGGTTGC TGATGATGAGAGCCCCCATTTTGCTTGGTGCTCTCAGCGCCTCGCTGAGCTCGGTTACAAAGAGTTCATGCTCGAGGCTAGAGGGCTTGATGCTGGGCCA AGGCTCGTGCAGAAACTGATTGGTTTTGGCGACAACCAGACGTCAAAGATTGTGGCTAGAATCGCGGAAGAGGAAGTCGCACATGTAGCTGTTGGGGTTT ACTGGTTTGTCTCAGTTTGCCAGAAAATGAACCGTGCCCCTTGCTCTACTTTCAAAGCAGCAGAAAGAAGAACTGCAGAGATGTGCTGCGATGGAGATTG CAGACCTTTGGGGTTCCTCTTAGGTCTTCCCTTCGCCTTCCTTTCTCTCCTCATCTCCATTGTTGGCATCGTCATCTGGATTGTCGGGTTGTTGTTGACT TGTATATGCCCTTGCTGCTTGTGCGTAACGATCATCGTCGAATTGGCTCTGGAGCTCATCAAGGCTCCTATTCATGTCATAGAGTGGTTCACTTCTCAGA TTCCTTGCTGA
AA sequence Show only first row Show all	>Lus10033620 pacid=23143238 polypeptide=Lus10033620 locus=Lus10033620.g ID=Lus10033620.BGIv1.0 annot-version=v1.0 MRFIPRATVLSSPFSTAEYSPWSCLHSWRQSPFNEDHLWGPTSPHPPPSSSFTATPPTLPAASSLAELGAIVLSTADPLTKSETLPIGQRHITPPDRPAR PPLPQLVSPWEIPAPKDSGLPLNAYMLHNLAHVELNAIDVAWDTVVRFSPFADVLGQGFFADFAKVADDESPHFAWCSQRLAELGYKEFMLEARGLDAGP RLVQKLIGFGDNQTSKIVARIAEEEVAHVAVGVYWFVSVCQKMNRAPCSTFKAAERRTAEMCCDGDCRPLGFLLGLPFAFLSLLISIVGIVIWIVGLLLT CICPCCLCVTIIVELALELIKAPIHVIEWFTSQIPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	2.2	0.9143
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	2.8	0.9036
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	3.0	0.9045
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	3.9	0.9005
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	4.9	0.8917
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	10.3	0.9130
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	13.4	0.8324
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	14.5	0.8673
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10034504 [exp]	16.7	0.8565
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	18.3	0.8629

Compare expression of checked genes

Lus10033620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.