Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20860 342 / 4e-112 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 341 / 5e-111 ATPMEPCRA methylesterase PCR A (.1) AT2G45220 331 / 9e-108 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G59010 324 / 5e-105 PME61, PME35 pectin methylesterase 61 (.1) AT5G53370 319 / 3e-102 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT5G51490 317 / 5e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 313 / 6e-101 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 313 / 1e-100 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 310 / 2e-98 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 303 / 6e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017665 [exp] 793 / 0 AT5G20860 403 / 4e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 333 / 2e-108 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 332 / 7e-108 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10025510 [exp] 322 / 2e-103 AT3G59010 547 / 0.0 pectin methylesterase 61 (.1) Lus10006103 [exp] 315 / 3e-102 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 316 / 9e-102 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 316 / 2e-101 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 314 / 9e-101 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 310 / 3e-98 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135100 [exp] 545 / 0 AT5G20860 468 / 3e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G149700 [exp] 345 / 2e-112 AT3G59010 565 / 0.0 pectin methylesterase 61 (.1) Potri.011G025400 [exp] 343 / 5e-112 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.002G202500 [exp] 327 / 6e-106 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 326 / 4e-105 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 324 / 4e-105 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 318 / 6e-103 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 320 / 3e-102 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 318 / 3e-102 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.012G126800 [exp] 317 / 3e-102 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10033621 pacid=23143459 polypeptide=Lus10033621 locus=Lus10033621.g ID=Lus10033621.BGIv1.0 annot-version=v1.0 ATGGCAGCATCGGCGGGCCTAGTTTCGTCATTTCGTGTTGTTACAGGGTTCTTTCTGATGCTGCTGCTACTGGTTGCAAGTTTAGCTGATAGTAGCAACC ACAGTCTTTCAGCTGCGTTATCGGCTCTGGTTAGCGAAACCATTTCCGAAACCGAAAACTTCACTGTCGTTAATGTTGATGGTTCGAAGTTGGATTTCGG TCAAGCTGAACTCGCTCAATCTTTCTTTGGCTATTGTGAGAAGCTGAGAGGGATGTCTCTAAAAAGGCTTCGCCAATCGCTGTCAGCAATCAAAACTTCT CCGACGAAACACAAAGACGACATCCAGACATGGTTGAGCTCCGTCCTAACTTTCCACGAAGCTTGTAGGGATTCCATATCAAAGACGACCCTCTCGGTTC AAACCTCGAGGGTCGTTGATGTCGTCGCATCTCGCAAAATGGACTACCTCACCCGGCTAGCCAGCACCGCTCTGGCACTCACCAACACCATCGCCACCAC TACTACCACCAATACCAATACCAGTACTAGTAGTATTGGTACTGGTACTAATGATGTCGGCAAGAACAAATTCCCTGCATGGCTATCTCGCCGAGACAGG AAATTGTTGCAAACCGGTGGTGGTGGTGGTGTTAATGCAAACGTCGTGGTTGCGAAGGATGGGACGGGTAACTATGCAACGGTCTCAGCAGCTATTGCGG CGGCTCATGGTGGTCGGTTTGTGATATACGTGAAGGCAGGGAGGTACGAGGAGAAGATTCACACAAGCAAAGATGAGATTACTTTGGTTGGAGACGGTAA ATATTCCACCGTTATTATTGGCTCCGACAGCGTTAAAGGCGGCTCTTCCATGCCGGGCTCTGCAACTTTCACAATCACCGGCGACGGTTTCATGGCGATC GACATCGGCTTCCAGAACGCGGCGGGTCCATCGGGGGAACAAGCGCTAGCTCTCTATGTCGCCTCCGACCACGCCGTATTCTACCGGTGCAGTATCACCG GATACCAGGACACCCTCTTCGCCGTCGCCCTCCGCCAGTTCTACCGCGAGGGCGACATCTCCCGCACCATCGACTTCATCTTCGGCAACGCCGCCGCTGT CTTCCAGAGCTGCAACATCGGCCTCCGGCGGCCCCGCTCGGGAAACGAAAACGTGATTCTAGCCAACGGAAGAACGGATCCTGGCCAGACCACGGGTTTC TCCCTCCAGGACTGCCGGATCTCGGCCACCGCCGAGTTGGCTCAGGCGAAGGGCGGATTCGATTCGTATTTGGGCCGGCCGTGGAAGAAGTACTCGAGGG CCGTGGTGATGGAGTCGACAATCGACGGCGTCGTTTCGTCCAAGGGGTGGGCCCAGTGGCCCGGTCAGGGGTCGTATTCGAAGACGCTGTACTTCGGGGA GTTCCAGAATTCTGGACCGGGTTCGGGTACTTCGGCTCGGGTTCAGTGGCCTGGGTTTCGGGTTATGAATGTTAAGGAGGCTGACGAGTTTACTGTCGGG AATTTGATCGGCGGAAACTCCTGGTTGCCTTCTACCGGCGTTGCTTTTGCGGCGGGGCTCCAATAA
AA sequence Show only first row Show all	>Lus10033621 pacid=23143459 polypeptide=Lus10033621 locus=Lus10033621.g ID=Lus10033621.BGIv1.0 annot-version=v1.0 MAASAGLVSSFRVVTGFFLMLLLLVASLADSSNHSLSAALSALVSETISETENFTVVNVDGSKLDFGQAELAQSFFGYCEKLRGMSLKRLRQSLSAIKTS PTKHKDDIQTWLSSVLTFHEACRDSISKTTLSVQTSRVVDVVASRKMDYLTRLASTALALTNTIATTTTTNTNTSTSSIGTGTNDVGKNKFPAWLSRRDR KLLQTGGGGGVNANVVVAKDGTGNYATVSAAIAAAHGGRFVIYVKAGRYEEKIHTSKDEITLVGDGKYSTVIIGSDSVKGGSSMPGSATFTITGDGFMAI DIGFQNAAGPSGEQALALYVASDHAVFYRCSITGYQDTLFAVALRQFYREGDISRTIDFIFGNAAAVFQSCNIGLRRPRSGNENVILANGRTDPGQTTGF SLQDCRISATAELAQAKGGFDSYLGRPWKKYSRAVVMESTIDGVVSSKGWAQWPGQGSYSKTLYFGEFQNSGPGSGTSARVQWPGFRVMNVKEADEFTVG NLIGGNSWLPSTGVAFAAGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	0	1
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	2.2	0.9792
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	2.2	0.9465
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016440 [exp]	2.4	0.9707
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	2.4	0.9686
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	4.9	0.9430
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	5.3	0.9438
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	5.3	0.9679
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	6.3	0.9378
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	6.7	0.8684
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	7.7	0.9197

Compare expression of checked genes

Lus10033621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.