Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03770 488 / 7e-172 AtKdtA, KDTA KDO transferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017662 [exp] 291 / 1e-96 AT5G03770 186 / 2e-55 KDO transferase A (.1) Lus10017663 [exp] 170 / 2e-52 AT5G03770 115 / 8e-32 KDO transferase A (.1) Lus10017664 [exp] 129 / 1e-36 AT5G03770 90 / 1e-22 KDO transferase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095900 [exp] 605 / 0 AT5G03770 538 / 0.0 KDO transferase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF04413 [flax] [poplar] Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
Representative CDS sequence Show only first row Show all	>Lus10033622 pacid=23143405 polypeptide=Lus10033622 locus=Lus10033622.g ID=Lus10033622.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCGGGAAATGGGTTGCTGTTCTACAAGATCTACAGGGCGTTAACCTACACTCCTTCGCCGATCGTACACCTTCACTTGCGGTGGCGCAAGC TCCGCGGCATCGAGCACCCTACGCGGTGGCCTGAGCGGCTCGGCCGAGCTTCTCTCGCCCGGCCGCCTGGTCCACTCGTCTGGTTTCACGCCGTATCCTT AGGCGAAGGAATGGCTGCGATCCCTGTCATCAAGCAGTGCGTTCACCGGAGGCCTGATTTGATCGTTCTTATGACGACTACTACGGCGTCTGCATTTAAA GTTATCGAGAATGATATTCCAAATGGCGTTCTATACCAGTTTTGTCCTGTGGATACCCCTGCTGCCATGGATGCTTTCCTCAGCTACTGGAAGCCAACCG CAATTATCTTACTGGAGAGCGAATTGTGGCCGAATCTAATCATGGGTTCTTCAGCCATGGGTGTAGGATTGGCATTCCCATTGATATCTTTAATGCTGTC TAAGTTTTCCTTGATTGTCCCACTGAGTACTATACAAGCAATACAGTACCAGCTTCTGCAGGCTCCACCCTTTGTCATTAATTTCGCTGGTGATTTGAAA TATGTGGTAGAACATAACGCTGCTAAGAAAAATACAACAAGCACAGACGATTTGAAGGAACAGCTATCCAATAGGCATGTATGGATGGCGGCTTCGATTC ACAGAGGCGAAGAACAAGTAATGCTAGCAGTTCACTTATCGTTGGTGCGAAGGTACCCTGACCTGTTGACTATCGTTGTCCCTCGCCATCCGCAGCATGC ATCGGAGCTTGTTAAAAGATTGCAGAAAGAGGGACACCGTGTAGTTTTGAGGTCCCGCAAGACAAAGATCACAGCGAGAGACGCAATATTTGTGGTTGAC ACTTTAGGTGAATTGAGGCATCTATATAGTCTAACACCAATAGCTGTAATTGGAGGTTCTTTCTGTCCTGATTTTGCTGGCCATAACATATCGGAAGCTG CTGCAGCTGGCTGTGCTGTTTTAACAGGTGTTCATGTTGGCCATTTTGCGCACATGATCAATCAAATGCGACGGCTCGATCCTTCTTCGATTGTTCAGGT TTCTGGAGAGGCAGAACTTGAAGAAGCACTCGTCAAGCTTTTCAGTGATGCAAAGGTTCTAGCAGCACGACGCAGGGCTTCGAAACAAGCATTAGATGCA CTATCAACTGGAGTCGTTGCCAATGTTTGGAACCTCGTAAACACTCATGTCCTTTGA
AA sequence Show only first row Show all	>Lus10033622 pacid=23143405 polypeptide=Lus10033622 locus=Lus10033622.g ID=Lus10033622.BGIv1.0 annot-version=v1.0 MAAAGNGLLFYKIYRALTYTPSPIVHLHLRWRKLRGIEHPTRWPERLGRASLARPPGPLVWFHAVSLGEGMAAIPVIKQCVHRRPDLIVLMTTTTASAFK VIENDIPNGVLYQFCPVDTPAAMDAFLSYWKPTAIILLESELWPNLIMGSSAMGVGLAFPLISLMLSKFSLIVPLSTIQAIQYQLLQAPPFVINFAGDLK YVVEHNAAKKNTTSTDDLKEQLSNRHVWMAASIHRGEEQVMLAVHLSLVRRYPDLLTIVVPRHPQHASELVKRLQKEGHRVVLRSRKTKITARDAIFVVD TLGELRHLYSLTPIAVIGGSFCPDFAGHNISEAAAAGCAVLTGVHVGHFAHMINQMRRLDPSSIVQVSGEAELEEALVKLFSDAKVLAARRRASKQALDA LSTGVVANVWNLVNTHVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	0	1
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	2.8	0.8104
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	6.2	0.7193
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	7.5	0.7774
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	8.5	0.7278
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	10.6	0.7946
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	12.0	0.7009
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	13.2	0.7606
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	13.5	0.7567
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	14.4	0.7553
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	20.5	0.7341

Compare expression of checked genes

Lus10033622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.