Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06230 421 / 3e-136 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 217 / 2e-62 GTE3 global transcription factor group E3 (.1) AT1G17790 206 / 3e-58 DNA-binding bromodomain-containing protein (.1) AT5G65630 141 / 4e-35 GTE7 global transcription factor group E7 (.1) AT5G14270 139 / 6e-34 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G27260 139 / 1e-33 GTE8 global transcription factor group E8 (.1.2) AT5G10550 134 / 2e-32 GTE2 global transcription factor group E2 (.1) AT3G01770 133 / 4e-32 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G63320 122 / 2e-29 NPX1 nuclear protein X1 (.1.2.3) AT2G34900 119 / 6e-29 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017661 [exp] 1351 / 0 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 1276 / 0 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 154 / 3e-39 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10007096 [exp] 148 / 3e-37 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 145 / 2e-36 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 139 / 8e-36 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10032076 [exp] 138 / 2e-33 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 137 / 3e-33 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10011989 [exp] 119 / 6e-28 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090700 [exp] 601 / 0 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 594 / 0 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 266 / 1e-80 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 246 / 7e-74 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 207 / 4e-58 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 203 / 1e-56 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.012G094300 [exp] 165 / 2e-42 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.015G091800 [exp] 146 / 4e-36 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G355300 [exp] 137 / 9e-34 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 133 / 2e-32 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10033623 pacid=23143253 polypeptide=Lus10033623 locus=Lus10033623.g ID=Lus10033623.BGIv1.0 annot-version=v1.0 ATGACGGAGGACCAGACTGGAAGTGTGAAGGAAAGAGGTGATAACTCGGGTAATGGTTCTGAACCTCAAGCCTTAGAGTCGGATGAGACAGATTCTGTTC AGCCACGGGATGATAAATCATGTAATGCATCTGAACCTCAAGCCTTGGTGTCAGAAGACACGAATTCTGCTCCGGTTCGTGATGGTGACTCTGTTGAAGC TTCGGAACCGCAAGCCTTGGTGTCAGAAGACACAGATAATGTCCAGACACAGGAGGATGATGCTCCGAAAGGTTCTGAAGCGCAAGACTTGGTTTTAGAA GATGCGGGTAATGATCAGGCACGTGAGGATGACTCGTCCAAAGCTTCTGAACTGCAAGCCGTGGTGATGGAAGAGTCTAATTCTGCTCTGCCACAGGTTG ATGAGTCATCAAAAGCTTCCGAAGTGCAAGCATTACCGTCGGAAGATGCGGGTTGTGCTCAGCCACGGGATGATGACTCGATGAAGGATTCAGAAGTGCA GGCAATGGAATCTGAATGCACAGATACTGTTCAGCCAGGGGATGATAACTCTGTTAAAATTTCTGAACCGCAACCTGCAGTTGCAGAAAACACAGGTTCT GCTCAGCCGCAGCAGCCGGGGGAGCAAGTAGAGCCCATGGACTCTGGGCAGGATCTGGAACCACCGTCTGGGCAACAAAAACAGCAAGAGGAACCGCAGG CTCCTCTCCTGCCACCTCCTTTACGTGTGGATGTGACCTCAGATGACTCTTCGAACCTCCATAGACAGCAGGTAGATCCAACGGCCAGTGGAAGAGGAGT GGAAGAGCCTGCTGGAGATGGAGCTGGGAAGGGTGGTCAAGAGGGACGAATAAAGATAAACTTAGCGTCGGTTTCTAAGCAGGAGATGAGAGAGATCAGG AGGAAGCTTCAGAATGAACTCAATACCGTAAAGATGTTGGTGAAAAGGATTGAGGCGAAGCAAGGTCAGCTTAGCGCAACGACTCTTGGCATTTCACCTC CTTTGAGACGTACTGTCTTGGATAGAGGATTGATGAGGGCAAACTCAGATGTAGGATCCGTGGGTGTTCATCGTGAGGTTGCTACTCCCACGCCTAGGCA GACTCGGCCTCTGCATCAGCTTAGTGTATCTGTGCTGCAGAATAGTCAAGGTCCTGGTGAGAATGTGGAGAAAGAAAAGAGAACGCCAAAAGCCAACCAA TTTTATAGGAATTCCGAGTTTTTGCTTGCGAAAGATAAGTTCCCCCCAGCAGAGAGCAACAAGAAGTCGAAATCGAATCATCGATTTGGGTCAAATCACA AAATATTCAGGAGCTGTAGTTCAGTGCTTGATAAGTTGATGAAGCATAAGCATGGTTGGGTTTTTAATACTCCTGTTGACGTGGAAGGTCTTCGTTTGCA TGACTACTTCACCATTATTAAACATCCTATGGACTTGGGAACAGTCAAGGGGAGGTTAAATAAGAACTGGTACAAGTCACCGGAGGAGTTTGCTGAAGAT GTGAGACTTACGTTTCATAATGCTATGAGGTACAACCCAAAAGGTCAAGATGTCCATATTATGGCTGAGCAGTTGCTGACAATGTTTGAAGAGAAGTGGG CTGTTATAAAGTCTGATCATGAACGGGAGAGGCTCGCTACTTATGATATGGGTTATCCAACTCCTACATCTAGAAAGATTCCTTCACTGTCGTTGCCCAA TCTTGATATGAGAAGGATTTTGGATCGATCAGAGTCGATGAATTACCCTCCCATTGACATCAGACAAAGGCCTCTTGTCACTACACCGTCAAGTAGGACC CCTGCTCCTAAAAAGCCCAAGGCAAAAGATCCACACAAGAGAGACATGACTTATGAGGAGAAGCAGAAGCTGAGTACAAATCTTCAGAGCTTGCCTTCAG ATAAGCTGGATAACATTGTACAGATTATTAAGAAACGAAATTCAGCACTTTCACAACATGACGATGAGATCGAAGTGGATATTGATAGTGTTGATGCAGA GACTCTGTGGGAACTTGAGAGGTTTGTGACCAACTACAGAAAGAATCTAAGCAAGAATAAGAGAAAAGCTGAGCTTGCTTTACAAGCTAGATCTCAAGTG GAGCCAAATGTCCAACAGAAGGCCCCTGCTCCATCTCCTGCAGAACTTCCTAAAGGAACCAAAGAAGGTGAAAAGAATGTTCTGACTTCATCACCGGGAC AAGCAGAAAAACAAGCGGCTAATGAAACTAGGTCAAGTAGTTCAAGCAGTTCCAGCAGTGATTCTGGGTCTTCTTCCAGTGACTCTGACAGTGACAGCTC CTCAGCTTCTGGATCTGATGTAGGGCATTAA
AA sequence Show only first row Show all	>Lus10033623 pacid=23143253 polypeptide=Lus10033623 locus=Lus10033623.g ID=Lus10033623.BGIv1.0 annot-version=v1.0 MTEDQTGSVKERGDNSGNGSEPQALESDETDSVQPRDDKSCNASEPQALVSEDTNSAPVRDGDSVEASEPQALVSEDTDNVQTQEDDAPKGSEAQDLVLE DAGNDQAREDDSSKASELQAVVMEESNSALPQVDESSKASEVQALPSEDAGCAQPRDDDSMKDSEVQAMESECTDTVQPGDDNSVKISEPQPAVAENTGS AQPQQPGEQVEPMDSGQDLEPPSGQQKQQEEPQAPLLPPPLRVDVTSDDSSNLHRQQVDPTASGRGVEEPAGDGAGKGGQEGRIKINLASVSKQEMREIR RKLQNELNTVKMLVKRIEAKQGQLSATTLGISPPLRRTVLDRGLMRANSDVGSVGVHREVATPTPRQTRPLHQLSVSVLQNSQGPGENVEKEKRTPKANQ FYRNSEFLLAKDKFPPAESNKKSKSNHRFGSNHKIFRSCSSVLDKLMKHKHGWVFNTPVDVEGLRLHDYFTIIKHPMDLGTVKGRLNKNWYKSPEEFAED VRLTFHNAMRYNPKGQDVHIMAEQLLTMFEEKWAVIKSDHERERLATYDMGYPTPTSRKIPSLSLPNLDMRRILDRSESMNYPPIDIRQRPLVTTPSSRT PAPKKPKAKDPHKRDMTYEEKQKLSTNLQSLPSDKLDNIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELERFVTNYRKNLSKNKRKAELALQARSQV EPNVQQKAPAPSPAELPKGTKEGEKNVLTSSPGQAEKQAANETRSSSSSSSSSDSGSSSSDSDSDSSSASGSDVGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	1.0	0.9775
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	2.6	0.9130
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	3.3	0.9098
AT1G18610			Galactose oxidase/kelch repeat...		Lus10017860 [exp]	3.5	0.9057
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	5.3	0.9314
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	6.5	0.9304
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	7.1	0.8901
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	7.9	0.8709
AT2G24530			unknown protein		Lus10026942 [exp]	8.5	0.8875
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	9.9	0.9106

Compare expression of checked genes

Lus10033623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.