Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 451 / 4e-152 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 406 / 2e-134 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 393 / 2e-129 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT2G46720 305 / 1e-95 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G01120 306 / 2e-95 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G16280 304 / 1e-94 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G15090 299 / 3e-93 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT1G19440 298 / 2e-92 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT4G34520 298 / 2e-92 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34250 294 / 3e-91 KCS16 3-ketoacyl-CoA synthase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033626 [exp] 739 / 0 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033627 [exp] 593 / 0 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 535 / 0 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 534 / 0 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10017659 [exp] 462 / 7e-160 ND 37 / 0.006 Lus10040333 [exp] 447 / 2e-150 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 445 / 2e-149 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 424 / 2e-141 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002192 [exp] 422 / 2e-141 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 463 / 1e-156 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 452 / 1e-152 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 436 / 3e-146 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 427 / 4e-143 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 417 / 5e-139 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 410 / 6e-136 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.019G091600 [exp] 384 / 2e-126 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G238700 [exp] 369 / 7e-123 ND / Potri.008G020500 [exp] 360 / 1e-119 ND / Potri.009G116700 [exp] 301 / 2e-93 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10033625 pacid=23143336 polypeptide=Lus10033625 locus=Lus10033625.g ID=Lus10033625.BGIv1.0 annot-version=v1.0 ATGGAGGTCCATATCCTCTTGGCATCAATACCCCTAATAATCCTAACCATACCAATCCTTCACCAGCTTCTCAAATTCATGCAACGAAAGCTATACCTGC AGAAATCCAGTTGTTACCTCTTGGCTTACCAGTGCTACAAACCACCCGACGAGCTGAAGCTGAGCACCGGAAACTCCATCAAGATCATCCTCCGGAACCA TAACCTGGGACTCGAAGAGTACAGGTTCCTCCTCAAAACTATCTCCCGCTCCGGCATCGGAGAGGAGACCTACTGCCCCAGGAACTTCCTCGACGGTCGC GAAATGTCCCCCACGTTTCGCGACTCCCTCCGGGAGATCGAGGACGCCGCCTTCTCCATCCTCGACAACCTCTTCGCCAAGTCGAAAGTCTCCCCCACAC AGATCGACATTGTGGTAACGACGGCCTCACTCTTTGCCCCGTCGCCGACGCTGTCGGGCCGGATAGTGAACCGGTACAAAATGAAGGAGGATGTGAAGAC GTTCAGCCTGAGCGGGATGGGGTGCAGCTCGAGCGTGGTGGCGGTCGACATGGTGCGACAGATGTTCAAAAAGAAGAGGGAGAGGAGTTTCGGGGTGGTG GTGGCGATGGAGTCCACGGCGGCGCAGTGGTACGGCGGGAGAGAGAAGTCTATGATGTTGTCGAACGTGTTGTTTCGAGCCGGAGGGAGCTGCCTCCTCC TTACCAACCGTTCGGACCGAGCCGTTTTGAAGCTGGATGAGGTGGTCCGGACCCACCTGTCAAACGACGTGTCGTATGGGTGTGCTACCCACGTGGAGGA CGATGAGGGGTTCCTTGGAGCCCGACTCTCCAAAGACTTGCCTAAGGTGGTTATCCAAGGCATAGTACAAAACTTCAAAACCTTGCTCCCCAAGGTTCTC CCACTCTACGAAATCATCCGATTCTCCCTTGTCCGTAACTGGCAAATCAAGCTGATGAACTGGATCCGGATCCCCCACACTTCTTCATCCAAACCACCCA TTATCAACATAAAAGCAGGCATCCAGCACTTCTGCGTGCACGCAGGGGGGAAGGCAGTGATCGAAGGGTTCGGGAAGAGCTTCGGGCTCGAGGAATTCGA CATGGAGCCATCTCGAATGACGCTGCATCGATTCGGGAACACGACGCGTAGCAGCCTGTGGTACGTTTTGGCGTACATGGAGGCCAAGAGGAGGCTGAAG AAAGGTGACAAAGTGCTCATGGTTGGGTTGGGGGCTGGGTTCATGTGCAACACTTGTACTTGGACGGTCGAGAATGAGTGGTGGTCGATGGACGGTGGCG ATGATGTTGTTGATGATGGGGATAATAATGTGTGGTCGGATTGTGTCGATCGGTATCCAGTTGATACGACGTCGGCGAACTCGTATGCTGAGAAGTTTGA CTGGATTTTCGAGGATTGGTCGATCTTCTTCTTCGTCCACAAACCAGAAAACCATCAAAATCTCACCAATCAAGAACAAACCCAAGTTCAATTCCTTCAA TCCCCAATCCAACCCAAGATGATGGGAGTGGGAATATCAATCCTAATGCTAATCAAATCCACAGCACTCTTCCTCATCTTCGTCTACATTCGAACCACCT TCAAAACCTTTACCATACTATCCCTCCCTTTCCTCTACGCTTCCCTAATCGCCGCCTTAGTCTCCTTAGCTTCCCACCCATCGATCGACCTCCCGATCCT CCTCGGAAAATCCTCAGATGGGAGCTTCCCGATTTGGGCTTCGATCATGTTCAGCCCTTACCTCTACTTCGTCAGGCTGTTCTGCTTCCTGCGCCGGCTG GCCAGCGGCGAGGAAGCCTACAGCGAGATCTGCGACGGGGTCTACGTCGGTGGGTGGCCTTACGCGGCGGAGAAGTTGCCACCTGGTAATCCGGCGATCG TCGACTGTACCTGTGAGTTCCCGAGGTTGAAGGAGTTCAGAGGGTGTTCGTATCTGTGTGTGCCGACTTGGGACACGAGGTCGCCTCAGCCTGCGGATAT TGAGTCAGCTGTTAAGTGGGCTTGCCGGAAGAGGGCTCAGAATCGTCCGGTGTTCGTCCATTGCGCTTATGGGCATGGGAGAAGCGTTGCTGTAATGTGT GCACTGCTGGTGGCGTTAGGAGTGGTGGAAGACTGGAAGAAGGCTGAGAAGTTTATTGCTGTGAAGAGGCCGTATATACGCATGAATTCTCTACACAGAA AGTCCTTGGAAGAGTGGTCCAAACATAGGCTGTCAAAGCCTGGTTCAATGGTTCAACCAACTGCTTCTTAG
AA sequence Show only first row Show all	>Lus10033625 pacid=23143336 polypeptide=Lus10033625 locus=Lus10033625.g ID=Lus10033625.BGIv1.0 annot-version=v1.0 MEVHILLASIPLIILTIPILHQLLKFMQRKLYLQKSSCYLLAYQCYKPPDELKLSTGNSIKIILRNHNLGLEEYRFLLKTISRSGIGEETYCPRNFLDGR EMSPTFRDSLREIEDAAFSILDNLFAKSKVSPTQIDIVVTTASLFAPSPTLSGRIVNRYKMKEDVKTFSLSGMGCSSSVVAVDMVRQMFKKKRERSFGVV VAMESTAAQWYGGREKSMMLSNVLFRAGGSCLLLTNRSDRAVLKLDEVVRTHLSNDVSYGCATHVEDDEGFLGARLSKDLPKVVIQGIVQNFKTLLPKVL PLYEIIRFSLVRNWQIKLMNWIRIPHTSSSKPPIINIKAGIQHFCVHAGGKAVIEGFGKSFGLEEFDMEPSRMTLHRFGNTTRSSLWYVLAYMEAKRRLK KGDKVLMVGLGAGFMCNTCTWTVENEWWSMDGGDDVVDDGDNNVWSDCVDRYPVDTTSANSYAEKFDWIFEDWSIFFFVHKPENHQNLTNQEQTQVQFLQ SPIQPKMMGVGISILMLIKSTALFLIFVYIRTTFKTFTILSLPFLYASLIAALVSLASHPSIDLPILLGKSSDGSFPIWASIMFSPYLYFVRLFCFLRRL ASGEEAYSEICDGVYVGGWPYAAEKLPPGNPAIVDCTCEFPRLKEFRGCSYLCVPTWDTRSPQPADIESAVKWACRKRAQNRPVFVHCAYGHGRSVAVMC ALLVALGVVEDWKKAEKFIAVKRPYIRMNSLHRKSLEEWSKHRLSKPGSMVQPTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	0	1
					Lus10024091 [exp]	1.7	0.8486
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	4.1	0.8772
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	4.5	0.8609
AT5G17190			unknown protein		Lus10031957 [exp]	8.4	0.8356
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	9.4	0.8421
					Lus10035430 [exp]	11.7	0.8173
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	12.8	0.8242
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	13.2	0.8378
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	14.5	0.8258
AT5G43150			unknown protein		Lus10041628 [exp]	15.7	0.8091

Compare expression of checked genes

Lus10033625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.