Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 459 / 4e-159 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 417 / 3e-142 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 397 / 2e-134 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 312 / 9e-101 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G46720 308 / 3e-100 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT2G16280 306 / 7e-99 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G15090 303 / 7e-98 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34510 301 / 7e-97 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT4G34250 298 / 6e-96 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT4G34520 296 / 5e-95 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033625 [exp] 724 / 0 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10033627 [exp] 620 / 0 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 533 / 0 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 530 / 0 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10023458 [exp] 447 / 4e-154 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 445 / 3e-153 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 407 / 3e-138 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 403 / 1e-136 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002192 [exp] 400 / 1e-136 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 460 / 1e-159 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 457 / 1e-158 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 429 / 3e-147 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 421 / 4e-144 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.013G120100 [exp] 416 / 2e-142 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.001G234500 [exp] 401 / 3e-136 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.019G091600 [exp] 390 / 1e-132 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 305 / 4e-98 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.009G116700 [exp] 304 / 8e-98 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G125300 [exp] 301 / 9e-97 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10033626 pacid=23143396 polypeptide=Lus10033626 locus=Lus10033626.g ID=Lus10033626.BGIv1.0 annot-version=v1.0 ATGGAGAGCCATGTGATCTTCTTGGCATCAATAGCCCTAATGATCATAACCTTACCATTAATCCTTCGCCAGCTTCTCAAATTCATGCAAAAATCAAGTT GTTACCTCTTAGCTTACCAGTGCTACAAACCACCCGACGATCTGAAGCTGAGCACCGGAAACTCCACTAAAATCATCCTCCGGAACCCTAACCTAGGGCT TGAAGAGTACAGGTTCCTCATCAAAGCCATCTCCCGCTCCGGCATCGGCGAGGAGACCTACTGCTCCAGGACCTTCCTCGAAGGCCGCGAAATGTTCCCG GCCTTTCGCGACTCTATCCGGGAGATGGAGGACGCCGCCTTCTCCATCCTCGACACCCTCTTCGCTAAGTCGAAAATCTCCCCTGCACAAATCGACATCG TGGTAACGACGACCTCCCTTTTTGCCCCGTCGCCAACACTGTCGGCTCGGATCATGAACCGGTACAAGATGAAGGAAGATGTGAAGACGTTCAGCCTCAA CGGGATGGGGTGCAGCTCGGGCGTGGTGCCGATCGACATTGTGCGACAGATGTTCAAGAATAAGAGGGAGAGGAGTTTCGCGGTGGTGGTGGCGATGGAG TCAATTACGGGGAATTGGTACGGCGGGAGAGAAAAGTCGATGTTGTTTTCAAATGTGCTGTTCCGAGCCGGAGGGAGCTGCCTCCTCCTTACCAACCGTT CGGACCGAGCCATTCTGAAGTTGGATCAGATGGTCCGGACCCACCTGTCGAGTGACGTCTCGTACGGGTGTGCTATCCACGTGGAAGACAAGGAGGGGTT TCTTGGTGCCCGCCTCTCCAGAGACTTGCCTGAGGTGGTTTTCCAAGCCATAGAAGAAAACTTCAAAACCTTGCTCCCCAAGGTACTCCCACTCCACGAA ATCATCCGATTCGCCATTGTCCGTACCTGGAAAACCAAGCTTTTGGACCGGATCCGAATCCTCATCCGCACAACTTCTTCATCCAACCCACCACCGATTA TCAGCATAAAAGCGGGCATCCAGCATTTCTGCCTGCACCCGGGAGGGAGGGCGGTGGTCGAAGGGTTCGGGAAGAGCTTCGGGCTCGAGGAATTCGACAT GGAGCCATCTCGAATGACGCTGCACCGATTTGGGAACACTTCGTGTAGCAGCCTGTGGTACGTGCTGGCGTACATGGAGGCCAAGAGGAGGCTGAAGAAA GGTGACAAACTGTTGATGGTTGCGATGGGGGCTGGGTTCATGTGCAATAGTTGTACTTGGACGGTTGAGAATGAGTGGTCGTATATGGACGGTGGAGATG ATGATAAGGATAATGTGTGGTTGGATTGTGTCGATAGGTATCCGGTTGATACGACGTCGGCGAACTCGTATGCTGAGAAGTTTGACTGGATTTTCGAGGA TTCGGTTGGTTTTGTTAGGTTCGACCACGGTCAAATCTTTGGTCATTGTAGCTAG
AA sequence Show only first row Show all	>Lus10033626 pacid=23143396 polypeptide=Lus10033626 locus=Lus10033626.g ID=Lus10033626.BGIv1.0 annot-version=v1.0 MESHVIFLASIALMIITLPLILRQLLKFMQKSSCYLLAYQCYKPPDDLKLSTGNSTKIILRNPNLGLEEYRFLIKAISRSGIGEETYCSRTFLEGREMFP AFRDSIREMEDAAFSILDTLFAKSKISPAQIDIVVTTTSLFAPSPTLSARIMNRYKMKEDVKTFSLNGMGCSSGVVPIDIVRQMFKNKRERSFAVVVAME SITGNWYGGREKSMLFSNVLFRAGGSCLLLTNRSDRAILKLDQMVRTHLSSDVSYGCAIHVEDKEGFLGARLSRDLPEVVFQAIEENFKTLLPKVLPLHE IIRFAIVRTWKTKLLDRIRILIRTTSSSNPPPIISIKAGIQHFCLHPGGRAVVEGFGKSFGLEEFDMEPSRMTLHRFGNTSCSSLWYVLAYMEAKRRLKK GDKLLMVAMGAGFMCNSCTWTVENEWSYMDGGDDDKDNVWLDCVDRYPVDTTSANSYAEKFDWIFEDSVGFVRFDHGQIFGHCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033626 [exp]	0	1

Compare expression of checked genes

Lus10033626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.