Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 438 / 1e-148 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 155 / 5e-41 Calcium-binding EF-hand family protein (.1) AT1G29025 151 / 2e-39 Calcium-binding EF-hand family protein (.1) AT2G34020 134 / 2e-33 Calcium-binding EF-hand family protein (.1) AT2G34030 128 / 1e-31 Calcium-binding EF-hand family protein (.1) AT3G22930 41 / 0.0007 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017657 [exp] 879 / 0 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10042848 [exp] 457 / 2e-155 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10028144 [exp] 367 / 1e-121 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10041179 [exp] 41 / 0.0002 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 41 / 0.0005 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375500 [exp] 437 / 7e-148 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 259 / 6e-78 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 245 / 3e-74 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 241 / 2e-71 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.010G080900 [exp] 41 / 0.0006 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 40 / 0.0009 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033629 pacid=23143394 polypeptide=Lus10033629 locus=Lus10033629.g ID=Lus10033629.BGIv1.0 annot-version=v1.0 ATGGCCACCAAAGGATTCCTTCCAACATTCTCTCTGCACACCATCTTCATCATTTCTCTACTAACCTGCACCATCCATGGTGCTCATGGTCGCATTATCT CGACAACAACAAGCCAAGTGTCTGAAGGAGGAGGTATCGACGATCAGCAACAGAGCTCGATCATTCGGTTGGTTTCTTCTTCTCCGTATGGAAGCAGCTT CGACGAGTGCCATGAGACGTACGGTTTCTTGCCTTGCACGCGAACGGTCCTGGGGAACGTTTTCCTGATCGTGGTTTATGGGTACATGATGTTCTTGGCT GCAAAGTTGTTGTCTGGAGGGAGTGAGATTCTTCTGCAAGTGCTTGGTCCTGGGATTGTTGGTGGTCTCTTCTTGCCTGTGCTTGGCTCCCTCCCTGATG CTGCCATTATTCTCGCATCCGGACTGTCGGGAAGCAAGGAGGCAGCACAAAGTCAGATATCAGTAGGGATGGGAATGATGGCCGGATCAAACGTAATGAT GCTCACTGTGTTATGGGGATCCTGCCTGGTAATCGGAAACATTGACAATACAGCCTCTGCATCTGCAGTTTCAGGAAATCCACCTCGACTTTGGCTGACT AAACTGGGACTTTCGACCGATATCTGGACCTGCTATGGCGCCAGAATCATGTTGATTTCTCTGCTACCCTTCGTGATTGTCCAACTGCCACAAGCTTTTC ACTCCCAAGAAGGCAATGCAGCAGTTCTTGTTTCCCTCATTGTAGCCATCGTTTTGTTGATAAGCTACAGCCTCTACCAGGTTTTCCAGCCCTGGATTCA GAAAAGGAAGATAGCATATTCAAAGCATAAGCAGTTGATATCAGGGGTTCTGAAGCAGTTAAAGGCAAAGACGCTGGGAAGGCTGTTCATGGATAATGGT CAACCCAACGTAGATGCGATTCAGAAGTTATTCGCGGTAATGGACGAGAGCACAGATGGGTATCTAACAGCAAAAGAGTTGAGGGCACTAGTGATAGGAA TACAGCTCGAGGACGGAGACATGGATATCGACAATGCAGTATATCATGTGCTGAAAGAATTTGACGCATCTCACGATTCGGTTATTGATAAGGACGAGTT CACGCAAGGAGTATCGAGATGGCTTGAGAAGGCCAAGAATTCAGCATTATACGGACATAGGTCGCTGACGACAAAACTTCTACTCGACTTTGAAGAGTAC ACAAAGAAAGAACAAGATATTCTAGGAGGGCAGAATGACGATACCAAGAGTCCGCAAAGCATAGGCTGGGATGGTGCAAAAGCAGGATTGTTCTTGCTCT CAGGAACATTCATTGCTGCAGTAATTGCAGAGCCTCTGGTTGATGCTGTCAACAACTTCTCGAGTGCTTCAAAGATCCCTCCATTTTTCGTATCGTTTGT CATTATGCCTTTTGCTAGTTCCAGTGAGATAGTCTCGATCCTCATCTTTGCCAGCAAGAAGAATATGAGATCTGCATCGTTAGCGTACTCTGAAGTCTGT ATTACTCTTCTCTATGTGATTTACATTCAGAGAGGAACTGAGCTCTCACAAGTCACTGACTCGTGTGTGCTTTCTTCGTGCAGATATATGGGTCCGTGA
AA sequence Show only first row Show all	>Lus10033629 pacid=23143394 polypeptide=Lus10033629 locus=Lus10033629.g ID=Lus10033629.BGIv1.0 annot-version=v1.0 MATKGFLPTFSLHTIFIISLLTCTIHGAHGRIISTTTSQVSEGGGIDDQQQSSIIRLVSSSPYGSSFDECHETYGFLPCTRTVLGNVFLIVVYGYMMFLA AKLLSGGSEILLQVLGPGIVGGLFLPVLGSLPDAAIILASGLSGSKEAAQSQISVGMGMMAGSNVMMLTVLWGSCLVIGNIDNTASASAVSGNPPRLWLT KLGLSTDIWTCYGARIMLISLLPFVIVQLPQAFHSQEGNAAVLVSLIVAIVLLISYSLYQVFQPWIQKRKIAYSKHKQLISGVLKQLKAKTLGRLFMDNG QPNVDAIQKLFAVMDESTDGYLTAKELRALVIGIQLEDGDMDIDNAVYHVLKEFDASHDSVIDKDEFTQGVSRWLEKAKNSALYGHRSLTTKLLLDFEEY TKKEQDILGGQNDDTKSPQSIGWDGAKAGLFLLSGTFIAAVIAEPLVDAVNNFSSASKIPPFFVSFVIMPFASSSEIVSILIFASKKNMRSASLAYSEVC ITLLYVIYIQRGTELSQVTDSCVLSSCRYMGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	0	1
AT2G14095			unknown protein		Lus10035649 [exp]	1.0	0.9633
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	1.7	0.9473
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	2.8	0.9486
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	4.5	0.9437
AT2G01300			unknown protein		Lus10002277 [exp]	5.7	0.8987
AT2G01300			unknown protein		Lus10004062 [exp]	6.0	0.9306
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	6.7	0.9210
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	6.9	0.9234
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	7.4	0.9371
AT2G16980			Major facilitator superfamily ...		Lus10005626 [exp]	9.2	0.8905

Compare expression of checked genes

Lus10033629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.