Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58120 206 / 1e-64 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 202 / 4e-63 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G58110 94 / 8e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G43700 91 / 9e-21 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT4G38900 87 / 1e-18 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G40620 86 / 1e-18 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 83 / 2e-18 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 84 / 4e-18 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 82 / 2e-17 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G21230 81 / 6e-17 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017656 [exp] 439 / 2e-156 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 227 / 8e-74 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002185 [exp] 203 / 1e-63 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 89 / 6e-20 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029773 [exp] 89 / 8e-20 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 89 / 1e-19 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042211 [exp] 88 / 1e-19 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028595 [exp] 88 / 1e-19 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 88 / 1e-19 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091900 [exp] 249 / 2e-81 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 239 / 9e-78 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 236 / 5e-76 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 97 / 1e-23 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.003G014800 [exp] 93 / 3e-21 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.019G130000 [exp] 91 / 2e-20 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 90 / 2e-20 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 90 / 2e-20 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 90 / 2e-20 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.004G219100 [exp] 89 / 8e-20 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10033630 pacid=23143522 polypeptide=Lus10033630 locus=Lus10033630.g ID=Lus10033630.BGIv1.0 annot-version=v1.0 ATGGCGCAATTGCCGCCCAAAATCCCAACTTTACCCTCCTGGCCGGACCTCTCCTCCGACCAGAAGCCCCATTCCGCCGCCGCCCAACCTCCTTCCTCCG CCGCTGCCGCCAACAACAACCACCCTTCATGGGTAGACGAATTCCTTGACTTCTCCTCCGCTAGGCGGGGGACCCACCGGAGGTCGGCCAGCGACTCCAT CGCCTTCCTCGAGACCCCATTGATGACCCTCGACGACGACTGCCGCGGCGGAGGCGGGGGACGGAGCAGCAACAACAACGGCGGCAGCAATAATAATCAC CACAACCTCCAACGCCATGGCCAGCACGATTTCGACAAGTTCGACGACGAGCAGTTCATGTCCATGTTCTCTGTCGACGACATGTCGTCCAACCCCGGCG GTTCCAACTCCGACGACCACGACAGCATAAACGACGACAAGGAGGCAGCTACTACGACGGGCCAGTCGGAGGATAATTCGCAGCAAACGACGCCGTCTAA GGGGGATAATAATGGGGACCGGATATTCGATCCCAAGAGGGTAAAGAGGATATTGGCGAACAGGCAATCGGCGCAACGATCGAGAGTGAGGAAGCTACAG TACATATCAGAGCTCGAACGGAGCGTTACTTCGTTACAGGCGGAAGTGTCGGTGTTGTCGCCGAGGGTTGCATTTCTCGATCATCAAAGGTTGCTGCTTA ACGTGGACAACAGTGCTATCAAGCAACGGATCGCTGCTTTGGCTCAAGATAAGATCTTCAAGGATGCACATCAAGAGGCACTGAAGAGGGAGATAGAGAG ACTGAGACAAGTATACCAACATCAGAGCAACAAGAAGATGGATCATCAGACTGAACAAATTAGCAACGAACCAACTCCCATGACATCAACAGTAGATAAT CAGAAAGAGCAGCAACTTCTCCAGGTTTAA
AA sequence Show only first row Show all	>Lus10033630 pacid=23143522 polypeptide=Lus10033630 locus=Lus10033630.g ID=Lus10033630.BGIv1.0 annot-version=v1.0 MAQLPPKIPTLPSWPDLSSDQKPHSAAAQPPSSAAAANNNHPSWVDEFLDFSSARRGTHRRSASDSIAFLETPLMTLDDDCRGGGGGRSSNNNGGSNNNH HNLQRHGQHDFDKFDDEQFMSMFSVDDMSSNPGGSNSDDHDSINDDKEAATTTGQSEDNSQQTTPSKGDNNGDRIFDPKRVKRILANRQSAQRSRVRKLQ YISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYQHQSNKKMDHQTEQISNEPTPMTSTVDN QKEQQLLQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	0	1
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	2.4	0.8908
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	6.8	0.8604
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	9.6	0.8343
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	13.0	0.7841
AT1G23965			unknown protein		Lus10030641 [exp]	14.3	0.7979
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	14.3	0.7806
AT1G23965			unknown protein		Lus10030844 [exp]	16.1	0.8310
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	17.7	0.7858
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	21.2	0.7917
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	21.2	0.7820

Compare expression of checked genes

Lus10033630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.