Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48340 206 / 4e-65 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G11320 188 / 3e-58 Papain family cysteine protease (.1) AT5G50260 187 / 4e-58 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT5G45890 186 / 1e-57 SAG12 senescence-associated gene 12 (.1) AT1G47128 188 / 2e-57 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT4G11310 182 / 5e-56 RD21A, RD21 Papain family cysteine protease (.1) AT1G06260 180 / 2e-55 Cysteine proteinases superfamily protein (.1) AT3G48350 179 / 7e-55 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT5G43060 179 / 9e-54 Granulin repeat cysteine protease family protein (.1) AT1G20850 176 / 1e-53 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017674 [exp] 365 / 3e-128 AT1G06260 310 / 2e-104 Cysteine proteinases superfamily protein (.1) Lus10002184 [exp] 221 / 1e-71 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10028501 [exp] 192 / 3e-60 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 192 / 3e-60 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 192 / 4e-60 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 192 / 4e-60 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10039901 [exp] 194 / 5e-60 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 192 / 6e-60 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 191 / 9e-60 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183100 [exp] 196 / 3e-61 AT5G50260 489 / 2e-174 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.014G024100 [exp] 192 / 6e-59 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G076000 [exp] 187 / 3e-58 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 187 / 5e-58 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 187 / 5e-58 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 186 / 1e-57 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 185 / 4e-57 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 184 / 4e-57 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.012G090900 [exp] 185 / 5e-57 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 184 / 7e-57 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10033631 pacid=23143281 polypeptide=Lus10033631 locus=Lus10033631.g ID=Lus10033631.BGIv1.0 annot-version=v1.0 ATGTACCTTCGTCTGTTGCCTAAGAATTCAAGCAAGGATCAGAAGCATGCCAATTTCAGCTGCGATGATTTGCCGGAGAAGGTAGATTGGAGGAAGAAAG GTACTGTTACTGAGGTCAAAAATCAATTATGCGGAGATAGTTGGGCATTCTCGACTGTGGCAGCTGTCGAGGGCTTCCACAAAATCAAGACAAGAAAACT AACGACTCTTTCGGAACAAGAGCTCGTAGACTGTGTTGGTGGTGGGGACGGGTGCAAAGGTGGGGCCGTAGAGGATGCATACGACTTCATCACGGAGATT GGGGGACTAACGACTAATGATAACTATCCTTACAAAGGCAGAGATGGAGTTTGCCAGAAAAAGAAACTGAAACATCCTTCTGCAAAAATTAATGGATATG AAGTATTACGTACCGACAACGAGACAATCCTCCAAGCCTCTGTTGCAAAGCAGCCTGGTATCTTCATTGGACCCTGCAAATCAGACCTCAACCACGGAGT CGCAGCAGTTGGGTATGGAGCTGAACATGGTAAGAAGTACTGGATTCTGAAAAGTTCATGGGGGAAAGACTGGGGAGAAGCTGGATACATCAGGTTGCCA CGTGATGTGAAGGAGAAAGGTGGCAAGTGCAGCATTGCCATGGCAATCAGTTTCCTGTCTGAATTCGTATTGTCTCCCATGTGA
AA sequence Show only first row Show all	>Lus10033631 pacid=23143281 polypeptide=Lus10033631 locus=Lus10033631.g ID=Lus10033631.BGIv1.0 annot-version=v1.0 MYLRLLPKNSSKDQKHANFSCDDLPEKVDWRKKGTVTEVKNQLCGDSWAFSTVAAVEGFHKIKTRKLTTLSEQELVDCVGGGDGCKGGAVEDAYDFITEI GGLTTNDNYPYKGRDGVCQKKKLKHPSAKINGYEVLRTDNETILQASVAKQPGIFIGPCKSDLNHGVAAVGYGAEHGKKYWILKSSWGKDWGEAGYIRLP RDVKEKGGKCSIAMAISFLSEFVLSPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	1.0	0.9122
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	5.5	0.8956
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	6.6	0.8874
AT3G62140			unknown protein		Lus10009976 [exp]	7.7	0.8842
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	10.2	0.8971
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	13.6	0.8843
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	15.9	0.8534
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	16.4	0.8221
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	18.4	0.8550
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	23.2	0.8488

Compare expression of checked genes

Lus10033631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.