Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06270 386 / 3e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 80 / 4e-16 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 69 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 66 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 66 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 65 / 3e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 64 / 5e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 64 / 5e-11 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 64 / 8e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12700 63 / 1e-10 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017675 [exp] 600 / 0 AT1G06270 397 / 1e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 70 / 6e-13 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 70 / 6e-13 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 66 / 1e-11 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 64 / 8e-11 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 63 / 1e-10 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 62 / 2e-10 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 62 / 3e-10 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 62 / 3e-10 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124100 [exp] 373 / 3e-129 AT1G06270 360 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G379500 [exp] 74 / 3e-14 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 72 / 1e-13 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 71 / 2e-13 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 68 / 3e-12 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 67 / 4e-12 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G205600 [exp] 67 / 5e-12 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 67 / 6e-12 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 67 / 6e-12 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 66 / 2e-11 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033632 pacid=23143363 polypeptide=Lus10033632 locus=Lus10033632.g ID=Lus10033632.BGIv1.0 annot-version=v1.0 ATGAAGAAATCACACCACCTCCGGCCGATCATTCAATCCCTCCCCCGCCGCACAATCTCCACTTCCTCGTCGACCCTGCAACAATCAATTCGATCCGCAA TCGAATCCCGAACCTTCCACCAAATCCCAGACCTTCTCAGTTCATCCACCGTCCCATGGCACAACCCAAATCCTTTCTCCTTCCTCTCCACCACCCCACT CCACGTCACAACCAAGCTCATCGACGATGTCTTACAGTCCTTCATCTCGCTCCGACCACGGTCTCGCGCCAAGATCGCTTACGACTGCCTCCTCGCTTAC GCTCTCCAGTCTCCTCACCCGCTCCCTCTCGCTCTCACCGTCCTCCAGCGTACACTCCGATCTGGCTGCACGCCGTTCCCTCAGTCTCAGCTCTTCCTAT CCTCCGCCTGGCTCGATCGCCGCCGGGGGAGGATGATTCCGATTCTTCCTCACTCCGTCGCCGGGATTGTATCCGAGATGAGGTTGATTGGATACAGCCC CGACAGTGGGACGTGTAACTATCTGATTTCGTCTCTGTGTGCTGTTGATGAGTTAGCAGAGGCTGTGAATGTCTTGAAAGGTATGGCTAGAGCTGGGTGC GTTCCTGATTTGGAGAGCTATGGTTCTGTTATCAGTGCAATGTGTGTAGCTAGAAAAAGTAGTGACGCTTTGGAGCTTTTGAAGGAGATGGTTGTTTTGA ATGGATTGACTCCACGGCAGGGGACTGTGAAGAGAGTTGCTGCGGTGTTGCGAGCGAATCGGGAGATACGGAGTGCTGTTGAACTGATTGAGTTCTTGGA GATGAAGAGCTATGCTGTTGGGTTTGAAGGTTATGAGGTGGTTCTTGAAGGGTGCTTGGAATGCAAAGAGTACATTTTGGGTGCAAAGATAGTTATGAGA ATGACTGGGAAGGGTTTTATACCGTATATCAAGTTTAGGCAAAAGGTTGTCCAGGGATTGATTGATGCTGGACAGTGGCAATTGGCCTGTTCTGTGAGGC AAAGGTTTGCAGAACTGAGTTCTTAG
AA sequence Show only first row Show all	>Lus10033632 pacid=23143363 polypeptide=Lus10033632 locus=Lus10033632.g ID=Lus10033632.BGIv1.0 annot-version=v1.0 MKKSHHLRPIIQSLPRRTISTSSSTLQQSIRSAIESRTFHQIPDLLSSSTVPWHNPNPFSFLSTTPLHVTTKLIDDVLQSFISLRPRSRAKIAYDCLLAY ALQSPHPLPLALTVLQRTLRSGCTPFPQSQLFLSSAWLDRRRGRMIPILPHSVAGIVSEMRLIGYSPDSGTCNYLISSLCAVDELAEAVNVLKGMARAGC VPDLESYGSVISAMCVARKSSDALELLKEMVVLNGLTPRQGTVKRVAAVLRANREIRSAVELIEFLEMKSYAVGFEGYEVVLEGCLECKEYILGAKIVMR MTGKGFIPYIKFRQKVVQGLIDAGQWQLACSVRQRFAELSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10033632 [exp]	0	1
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10035216 [exp]	13.0	0.6493
AT1G01770			unknown protein		Lus10014782 [exp]	23.9	0.6919
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	50.6	0.6511
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10017545 [exp]	184.5	0.5895

Compare expression of checked genes

Lus10033632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.