Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25180 323 / 6e-105 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13080 323 / 7e-105 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26330 319 / 1e-103 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 317 / 7e-103 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25140 317 / 9e-103 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G48280 314 / 1e-101 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 311 / 2e-100 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT5G25120 311 / 2e-100 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G48300 308 / 1e-99 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT4G31500 308 / 2e-99 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017676 [exp] 932 / 0 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017677 [exp] 824 / 0 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 774 / 0 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10024331 [exp] 691 / 0 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 458 / 3e-157 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034230 [exp] 442 / 4e-151 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 432 / 3e-147 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10002885 [exp] 424 / 6e-144 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 420 / 2e-142 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 437 / 3e-149 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 424 / 3e-144 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 422 / 1e-143 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 417 / 2e-141 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 411 / 3e-139 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 410 / 6e-139 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 410 / 7e-139 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 405 / 5e-137 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 404 / 2e-136 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 383 / 3e-128 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033633 pacid=23143433 polypeptide=Lus10033633 locus=Lus10033633.g ID=Lus10033633.BGIv1.0 annot-version=v1.0 ATGGATCACCTTCTTCAGATCCCACTCTTGCTGGTAATCACCTTCACAGCCATCTCCTTCATCTCCATCGTCGCCAAGAAGCTATCGCAATCCTACACCT CGAAGAACGTTGATGATAAGTACTTGCCTCCATCTCCATGGAAGCTTCCGATGATCGGGCACATCCACCACTTCATGACGGCCCAGCCACCTCACCGTCG CCTTCGTGAGCTTTCCCAGAAGCACGGGGACGTCGTCAGCTTGGACCTCGGGGAGATGCCCCACGTCATCGTTTCGTCTGCGGAGGCTGCGAAGCAGGTG ATGCGGACCCACGACATCAACTTCGCTCAACGACCGTTCCACCCTCACCAGGCCAAGGTCATGTACGGAGGGATCAACCTAATCCACGCACCCTACGGAG ATTACTGGCGCCAGCTCCGTCGCATTGCCACGCTCGAGCTGCTCACAGCCCGACGCGTGGAGTCCCTGCGACGAGTCAGGGAGGTGGAGGTGCTGACCCT CATGAAAGACATCTCCAACCATGCTGGTTCCACCATCGACCTTTCCATGAAGCTGTTCAACATGACCTATTGCATCATATCGAGGGCCACATTCGGCGAC GTCTCAGGGGAGCAGGAGGAGTTCATAAAGATCGCCGAGGAGATGGTGAAGTACGGTGGAGGGTTCGGGCTCGCTTACTTGTTCCCTTCGAGCGGGTTTG TGCAGAAGCTATTCTCGATGGAGAGTTGGCTCGACAAGATCCACGAAGGTGTTGACCGGTTGGCTGAGAGCATCATCAGCCAACATAGGGAGAGGAGGAA GTTGGTGAAGGTGAAGGAGGATGATGAGGATTTGCTTGATGTTCTTCTCAATCTCCAAGAAGATGAGACCACTCTTGGCTTCAACTTGTCTAACAACTGC ATCAAGGCTTTCATGCTGGACTTATTCCTAGCCGGAAGCGAGACACCATCAGCGCTAATAGAATGGACAATGTCGGAGATGGTGAAGCACCCAAAAGTCC TCCAAAAGGCACAATCCGAAGTGAGAAAGCACTTCGCAGACCAAGGTCGAGTGGTCGAGTCCCAAATCCACCAACTCGACTACTTGAAACACGTCATCAA AGAGGCCCTCAGGCTACACACCCCGGCGCCTCTGGTGCTCCCCCGAGAGTGCAGGGAGGAGTGTCAAGTTGGCGGGTACGACATCCCCTTGAAGACCACG GTCGTGGTCAACGTGTGGGCCATCGCCAGGGATCCTCGCTACTGGGGCAAAGATGCCGAAGAGTTCAGGCCCGAGAGGTTCGCGGATAGCAGCGTGAGTT ACAAAGGCGGGGACTTTGAGTTCCTGCCGTTCGGTGCTGGGAGAAGGATGTGTCCCGGGATGGGGTTCGGGCTAGCGTCTGTGGAGCTCAGTCTGGCGAA TCTGCTGTTCCATTTCGACTGGAAGCTTCCGCTCGGAGTCGAGCCGGAGAAGTTGAATATGGATGAGGTGTTTGGGATTACCATCAGGAGGAAGAAGCAC TTGGAGCTTGTTCCTTCAGTCTACAATCCTGTTCCTTAA
AA sequence Show only first row Show all	>Lus10033633 pacid=23143433 polypeptide=Lus10033633 locus=Lus10033633.g ID=Lus10033633.BGIv1.0 annot-version=v1.0 MDHLLQIPLLLVITFTAISFISIVAKKLSQSYTSKNVDDKYLPPSPWKLPMIGHIHHFMTAQPPHRRLRELSQKHGDVVSLDLGEMPHVIVSSAEAAKQV MRTHDINFAQRPFHPHQAKVMYGGINLIHAPYGDYWRQLRRIATLELLTARRVESLRRVREVEVLTLMKDISNHAGSTIDLSMKLFNMTYCIISRATFGD VSGEQEEFIKIAEEMVKYGGGFGLAYLFPSSGFVQKLFSMESWLDKIHEGVDRLAESIISQHRERRKLVKVKEDDEDLLDVLLNLQEDETTLGFNLSNNC IKAFMLDLFLAGSETPSALIEWTMSEMVKHPKVLQKAQSEVRKHFADQGRVVESQIHQLDYLKHVIKEALRLHTPAPLVLPRECREECQVGGYDIPLKTT VVVNVWAIARDPRYWGKDAEEFRPERFADSSVSYKGGDFEFLPFGAGRRMCPGMGFGLASVELSLANLLFHFDWKLPLGVEPEKLNMDEVFGITIRRKKH LELVPSVYNPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	0	1
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	1.4	0.9956
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	1.4	0.9966
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	2.4	0.9930
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	2.6	0.9927
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	3.5	0.9943
					Lus10014508 [exp]	3.5	0.9945
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	3.6	0.9901
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	5.9	0.9848
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	6.3	0.9937
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	7.3	0.9889

Compare expression of checked genes

Lus10033633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.