Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25180 333 / 8e-109 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25140 329 / 2e-107 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 318 / 5e-103 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26300 318 / 7e-103 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 317 / 2e-102 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25120 317 / 2e-102 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13080 316 / 4e-102 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26270 314 / 2e-101 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26320 311 / 2e-100 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26230 311 / 3e-100 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017677 [exp] 829 / 0 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10017676 [exp] 784 / 0 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033633 [exp] 779 / 0 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10024331 [exp] 665 / 0 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 453 / 4e-155 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 442 / 6e-151 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 430 / 6e-146 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10002885 [exp] 417 / 4e-141 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 416 / 1e-140 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 434 / 8e-148 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 421 / 5e-143 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 421 / 7e-143 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 417 / 2e-141 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 415 / 1e-140 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 414 / 3e-140 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074850 [exp] 414 / 5e-140 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 407 / 2e-137 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 406 / 3e-137 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 385 / 1e-128 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033634 pacid=23143310 polypeptide=Lus10033634 locus=Lus10033634.g ID=Lus10033634.BGIv1.0 annot-version=v1.0 ATGGATCATCTCCCTCAGATTCCAACCTTATTATCTCCAATCCCACTGATCTTACTCGTAATCACCTTCGCATCCATCGCCTTCATCTCGATCATCACCA AAAACCCATCGCGAACCTCGAAGAATAACATTGATGATAAGAACGTCAAGTACTTGCCTCCATCTCCATGGAAGCTTCCGATAATTGGACACATCCACCA CTTCTTGGTCACGGCCCAGCAACCCCACCGCCGCCTCCGTGAGCTTTCCCGGAAGCACGGGGATGTCCTCTGGCTGGACCTCGGGGAGATGCCCCACGTC GTCATTTCGTCGGCAGAGGCTGCGAAGCAGGTGATGCGGACTCATGACATCTGCTTCGCGCAACGACCGCTCCACCCTGACAAGGCCAAGATCATGTACG GAGGGATCGGCCTAATCAACGGACCCTACGGAGACTACTGGCGCCAGCTCCGCCGCATCGCCACGCTTGAGCTGCTCAGCGCCCGACGTGTGGAGTCCTT GCGGCGAGTTAGGGAGGCCGAAGTGCTTATTCTACTCAAGTACATCTCCCACCATGCTGGTTCCACCATTGACCTCTCCAAAAAGCTGTTAGACATGACC TATTGCATCATATCGAAGACAACCTACGGCGACATCTCAGAGGAGCAGGAAGAGTTCAAAAAGATCGCGGAAGAGATAGTGGATTACAATGGAGGGTTCG GGCTGGCTTACTTGTTCCCTTCGAGCAAGTTAGTCCGGAAGCTGTTTTCGATGGAGAGTTGGCTCGACAAGATACACAAAGGTCAGGACCGGTTGGCTGA GAGCATCATCAGTCAACATAGGGAGAGGAGGAAGTTGGTGAAGGTGAAGGAGGATGATGAGGATTTGCTTGATGTTCTTCTCAATCTTCAGGAAGATGAG ACTACTCTTGGTTTCAGCTTGTCTAACAACTGCATCAAGATTTTCATGCTGGAAATATTCCTTGCCGGAGGCGAAACACCATCAACACTAATAGATTGGA CGATGTCCGAGATGGTGAAGCACCCAAGAGTCCTCCAAAAGGCACAATGCGAAGTGAGAAAGCTCTTCGCCGACAAAGGTCAAGTCGACGAGTCCCAAAT CCACCAACTCGACTACTTGAAACTCGTCATCAAAGAGGCCCTCAGGCTACACACTCCGGCGCCTCTAGTGCTCCCCCGAGAGTGCATAGAGGAGTGTCAA GTTGGCGGTTACGACATCCCCTTGAAGACCACGGTCATGGTCAACGTTTGGGCCATCGCCAGGGATCCTCGTTACTGGGGTCAAGATGCTGAAGATTTCA AGCCCGAGAGGTTCGTGGATAGCCGCGTGAGTTACAAAGGCGGGGACTTTGAGTTCCTGCCGTTCGGTGCTGGGAGGAGGATGTGTCCTGGGATGGGATT CGCGTTAGCGACTGTCGAGCTTTGTCTGGCGAATTTGCTATTCCATTTCGATTGGAAGCTTCCGCTGGGAGTCGAGCCGGAGGGGTTGAATATGGATGAG GCGTTTGGACTAACGATCAGGAGGAAGAAGCACTTGGAGCTCGTTCCTGTAGTTTACAATCCTGTTCCTTGA
AA sequence Show only first row Show all	>Lus10033634 pacid=23143310 polypeptide=Lus10033634 locus=Lus10033634.g ID=Lus10033634.BGIv1.0 annot-version=v1.0 MDHLPQIPTLLSPIPLILLVITFASIAFISIITKNPSRTSKNNIDDKNVKYLPPSPWKLPIIGHIHHFLVTAQQPHRRLRELSRKHGDVLWLDLGEMPHV VISSAEAAKQVMRTHDICFAQRPLHPDKAKIMYGGIGLINGPYGDYWRQLRRIATLELLSARRVESLRRVREAEVLILLKYISHHAGSTIDLSKKLLDMT YCIISKTTYGDISEEQEEFKKIAEEIVDYNGGFGLAYLFPSSKLVRKLFSMESWLDKIHKGQDRLAESIISQHRERRKLVKVKEDDEDLLDVLLNLQEDE TTLGFSLSNNCIKIFMLEIFLAGGETPSTLIDWTMSEMVKHPRVLQKAQCEVRKLFADKGQVDESQIHQLDYLKLVIKEALRLHTPAPLVLPRECIEECQ VGGYDIPLKTTVMVNVWAIARDPRYWGQDAEDFKPERFVDSRVSYKGGDFEFLPFGAGRRMCPGMGFALATVELCLANLLFHFDWKLPLGVEPEGLNMDE AFGLTIRRKKHLELVPVVYNPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10033634 [exp]	0	1
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	7.4	0.8951
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	9.1	0.8771
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	11.0	0.8881
AT2G24960			unknown protein		Lus10042715 [exp]	13.1	0.8832
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	14.0	0.7734
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	14.7	0.7477
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	15.7	0.8814
					Lus10025268 [exp]	17.6	0.8794
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	19.3	0.8794
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	20.8	0.8794

Compare expression of checked genes

Lus10033634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.