Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 702 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 697 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 472 / 3e-153 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 461 / 6e-151 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 457 / 8e-148 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 341 / 2e-104 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 324 / 6e-100 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 317 / 6e-96 ARF ARF4 auxin response factor 4 (.1) AT4G23980 303 / 3e-92 ARF ARF9 auxin response factor 9 (.1.2) AT2G33860 300 / 2e-91 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017681 [exp] 626 / 0 AT5G20730 414 / 1e-132 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10017680 [exp] 606 / 0 AT1G19220 550 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10027600 [exp] 585 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 501 / 5e-163 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 475 / 3e-157 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10012421 [exp] 476 / 1e-154 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10031354 [exp] 470 / 4e-154 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 468 / 3e-153 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 468 / 3e-152 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138500 [exp] 768 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 729 / 0 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 588 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 583 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 474 / 3e-155 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 473 / 2e-153 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 469 / 2e-153 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.005G207700 [exp] 471 / 4e-153 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 468 / 4e-152 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.005G236700 [exp] 468 / 9e-152 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10033635 pacid=23143251 polypeptide=Lus10033635 locus=Lus10033635.g ID=Lus10033635.BGIv1.0 annot-version=v1.0 ATGCCTCCAATCGGAAGTCTTGTTGTCTACTTCCCTCAAGGTCATAGTGAACAGGTTGCTGCATCTATGCAGAAGCAGACTGATTGTATACCAAGCTACC CCAACCTTCCTTCAAAGTTGATTTGCATGCTTCACAACGTCACCTTACATGCTGACCCGGAAACCGACGAGGTTTATGCGCAAATGACCCTGCAACCCGT AAGCAAATGTGACAGGGAAGCATTGATAGCTTCGGATATGGGAATGAAGCAGAATAGGCAACCTGCTGAGTTCTTCTGCAAAACTCTTACAGCTAGTGAT ACAAGCACTCATGGTGGATTTTCTGTCCCTCGAAGAGCTGCGGAAAAGATTTTCCCACCTCTCGATTTTGCAATGCAACCACCAGCGCAGGAACTAGTTG CTAGAGATCTACACGACAATGCGTGGACCTTTAGGCATATCTATCGGGGCCAACCGAAAAGGCATTTGCTTACTACAGGATGGAGTGTGTTTGTTAGCAA TAAGAGACTCTTTGCTGGTGATTCAGTTCTATTCATTAGAGATGAGAAGCAGCAGTTGCTTTTAGGTATCAGACATGCCAATAGGCAGCAACCAGCTCTC TCTTCATCGGTCATATCAAGTGACAGCATGCATATCGGGATCCTTGCAGCTGCGGCTCATGCTGCTGCAAACAACAGCCCGTTCACCGTGTTCTATAATC CTAGGGCAAGTCCTTCGGAGTTTGTGATTCCTTTCTCCAAGTATAACAAAGCGATGTATACGCAAGTATCTTCTGGAATGAGATTCAGGATGATGTTTGA GACCGAGGAGTCAGGTGTCCGCAGGTATATGGGTACAGTCACAGGTGTTACTGACTTAGATCCTGTGCGTTGGAAGAGTTCACAGTGGCGCAATCTTCAG GTTCGGTGGGATGAATCAACGGCTGGTGAACGACCAAGCCGAGTCTCGATTTGGGACATTGAGCCTGTGGTCACTCCATTCTACATATGCCCACCTCCCT TCTTCAGACCCAGGTTCCCTAAACAGCCTGGAATGCCTGATGACGAGTCGGACATTGAAAATGCTTTCAAAAGGGCAATGCCTTGGCTTGCGGATGACTT TGGTATGAAGGAAGGAGGACAAAGCTCAATCTTTCCTGGCCTAAGTTTGGTTCAGTGGATGAGTATGCAACAGAACAATAATCAATTGGCATCAACTCAA ACAGGATTCTTCCCCTCCATGCTTCCTTCAAATACTCTGCATAGTAACCTCAGCACCGATGATCCAACAAAGTTACTGAATTTTCAAACTGCTGGGCTAT CCGCAGCAGCGAGTAATGCCCTATCCGTGCCTAGCATCCAGTTCAACAAGACAAATACACAGAATCAGGCCAACCAGTTTCCTCCTCAGTCGGCCACTTC GTGGACTCAAAAGCAACAGCCACAGAATCCTCCTCCTAACCAACCACAGCAAGCACCTTCTTCCCAACCAATGCAGCAGCCGGTAAACGTTCTACAACAA CAACAAGAACAACAGCAACTAGTGCTACAACAACAACAACATTCAGGAGGGGTAGACCCTTCAAACAATATCCTCCAAGATGTTCCTAGTAGAGCGGATG CTCGGATTAAACACGAATTTTCTGGCTCAAAAGGTTCTGACCAACAGCTGAAATCGAAAGCTACAGTGGCTGATCAATTAGAGGCCTCGTCTTCTGGAAC ATCATACTGCTTAGAACCAGGCTCTACCCCCTTGCAAAATTTTGCACTGCCGTCCTTCGGTCTGGATGGCGACGTGCAATCACATCAAAGGATGAATAAT CTTCCTTTCTCGGCTAATATCGAAGGATTGGCACCGGACAGTTTGTTGTCAAGAGGATATGATTCCCAAAAGGATCTTCAGAACTTGCTCTCTAATTATG GAACTAATCCTCCTAGAGACATCGAGACTGAGTTGTCTAGTGCTGGCATGAGCTCGCAGTCATTTGGGGTTCCCAATATGTCTTTTAAGCCGTCGTGCTC GGCGGATGTTGCTATTAATGACGCTGGGGTTTTGAATAATGGATTGTGGGCAAATCAGACTCAACGTATGCGAACATACACCAAGGTTCAAAAGCGTGGC TCGGTGGGAAGATCAATTGACGTAACTCGTTATAAAGACTATGATGAACTCCGACATGATCTAGCCCGGATGTTTGGTATCGAAGGGCAGCTGGAAGATC CTCAAAGTTCTGACTGGAAACTGGTTTACGTAGACCACGAAAATGACATATTACTCGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGTTGTGTACAAAG CATAAAGATACTTTCATCAGTTGAAGTGCAGCAGATGAGCTTGGATGGGGACTTGGGTAATATTGCCCCGCCTGTTGCCGATCAGGCCTGCAGTGGCAGT GATAGTGGTAACGCATGGAGAGGACACTATGAAGATAATTCGGCTGCCTCGTTTAATAGATAA
AA sequence Show only first row Show all	>Lus10033635 pacid=23143251 polypeptide=Lus10033635 locus=Lus10033635.g ID=Lus10033635.BGIv1.0 annot-version=v1.0 MPPIGSLVVYFPQGHSEQVAASMQKQTDCIPSYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVSKCDREALIASDMGMKQNRQPAEFFCKTLTASD TSTHGGFSVPRRAAEKIFPPLDFAMQPPAQELVARDLHDNAWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIRDEKQQLLLGIRHANRQQPAL SSSVISSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPFSKYNKAMYTQVSSGMRFRMMFETEESGVRRYMGTVTGVTDLDPVRWKSSQWRNLQ VRWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPRFPKQPGMPDDESDIENAFKRAMPWLADDFGMKEGGQSSIFPGLSLVQWMSMQQNNNQLASTQ TGFFPSMLPSNTLHSNLSTDDPTKLLNFQTAGLSAAASNALSVPSIQFNKTNTQNQANQFPPQSATSWTQKQQPQNPPPNQPQQAPSSQPMQQPVNVLQQ QQEQQQLVLQQQQHSGGVDPSNNILQDVPSRADARIKHEFSGSKGSDQQLKSKATVADQLEASSSGTSYCLEPGSTPLQNFALPSFGLDGDVQSHQRMNN LPFSANIEGLAPDSLLSRGYDSQKDLQNLLSNYGTNPPRDIETELSSAGMSSQSFGVPNMSFKPSCSADVAINDAGVLNNGLWANQTQRMRTYTKVQKRG SVGRSIDVTRYKDYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQQMSLDGDLGNIAPPVADQACSGS DSGNAWRGHYEDNSAASFNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	0	1
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10027703 [exp]	2.0	0.8819
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	3.2	0.8986
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	5.7	0.8805
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10003518 [exp]	7.7	0.8452
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	9.5	0.8644
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	13.7	0.8594
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	14.0	0.8387
AT5G53620			unknown protein		Lus10008846 [exp]	19.5	0.8694
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	23.0	0.8106
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	23.1	0.8673

Compare expression of checked genes

Lus10033635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.