Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19410 651 / 0 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 441 / 5e-147 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 439 / 3e-146 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 406 / 3e-133 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 406 / 1e-132 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55090 311 / 4e-95 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 282 / 2e-84 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT5G13580 281 / 4e-84 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55100 279 / 7e-84 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G37360 276 / 6e-82 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017683 [exp] 1083 / 0 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 822 / 0 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 796 / 0 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 443 / 2e-147 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 387 / 9e-125 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 378 / 2e-121 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 291 / 2e-87 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 278 / 7e-87 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 262 / 6e-77 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070100 [exp] 707 / 0 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 441 / 1e-146 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 434 / 6e-144 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 430 / 8e-142 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 427 / 2e-140 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 423 / 2e-139 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 421 / 7e-139 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 294 / 1e-88 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 292 / 7e-88 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 292 / 9e-88 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033637 pacid=23143496 polypeptide=Lus10033637 locus=Lus10033637.g ID=Lus10033637.BGIv1.0 annot-version=v1.0 ATGGGTCAACAGGTTCTGGAACAGCCAGATTCGTCACATATTCGGTCTTCGAAATACAGAAGGCTGTCAAGAAAAAGACAAGCAGCAGCACACAGCCACC ATAGAACACCTATAGCAAGCAAGTCAACAAATTTCAGCTCACCAAAACTTACCTGTTCTTCCACCTACTTAACTCCTGCTATCACATTGTTACAAAACTC ATACTCGAGTTACTCCTTTCAACCATCTTCTGGAATTTCCTTGTTTATCTTACTCCAACCAACAATGTCATCATCCTGCTTCAACCCTCCCGCACGGCAG CTTGTCGAGGCTGCCGACAACCAAGACTCCACCTTTCCTTCCTCCATTTCCTCTTCTTCCTACCATCTGACTGTCACAAACCTTTCCTTTACCCTCACTC CCAAGTCATCACCCTCCTTCTGCTACCACCTTCCGTGGCGGCCCAAACCCGAACCGATCCATATCCTGAAATCCATTTCGTTCCAAGCTGGAAATTCAAA AATCCTCGCGATCGTCGGTCCAAGCGGTTCCGGAAAGTCCACCCTTCTCCGGTACATATCCGGTAGGGTGACGAACTCTGAGTTCGATCCCAAGGCTGTT GCAATCAACAGCCGTGGGATCTCTAGCCCTTCTCAGTTGAGAAAGATTTGTGGGTTTGTACCCCAAGAGGACAACTTGCTTCCTCTGCTTACTGTCAGGG AAACCCTAATGTACAGCGCCAAGTTCAAATTAAAAGAGCTGACCTTGAAGGAGAAAAAAGAGAAAGTTGATGGATTGTTGGTTGAGCTGGGGCTTGTGCG GGTGGCCGGCAGCTTCGTCGGTGACGAATCCTGCAGAGGAATCTCCGGCGGAGAGAGGAAGCGAGTTTCGATTGGGGTCGACTTGATCTCTGACCCCTCG ATTCTTATTCTCGACGAACCCACTTCAGGTCTTGACAGTAGCTCCGCGCTTCAGGTTATTGAACAGCTTTCTTCCATCGCTCGGGTTAAGCAGAGGACGA TCGTGATCTCGATTCACCAGCCAAGTTACCGGATTATACAAATCATCCCCGGTTTTCTCATCCTGTCCCAGGGTTTTGCCGTGCATTACGGTAGCTTGGA ATTGTTGCAGAACACCATCGCTGATCTAGGGTTCTGGATTCCTGACAGGTTAAACCCTATCGAATTCTCCATGGAAATCATACACTCGCTTGAAGATTCC GTGAAATCGCAAACCCTAAATCTGCCCGAATTAGATACAACGACAACGACAATCCATCGCTATCACCAATCAGACAACCTGCATTCCCCTGAATCACTAA TCGATTTCTCTGAAATTGCAAACCTCTGCTCGAGATCGTGGAAGATCATCTATAGAACCAAGCAACTCTTGACCGCAAGAACGATGCAAGCCCTAGCCGG AGGGTTCGTACTAGGGAGCGTGTACATCAAAGTACGGAAACACAGACACGACGACGACAACGGAGGAGCAATCGCAGAGCGATTCGGACTATTCGCATTC AGCCTCAGCTTCCTGCTCTCCTCCACCGTCGAAGCCCTCCCGATCTACCTCCAAGAACGGCGAGTCCTGATGAAGGAAGCTTCGCGAGGAAGCTACCGAA TTTCGAGCTATGTTATCGCCAACACCGTCGTCTTCCTCCCATTCCTCCTCGTAGTCGCGGTTCTCTTCTCCGTCCCGGTCTACTGGCTCGCGGGGCTCAA CCCTTCGATCGCCGCATTCGGGTTCTTCACGCTCATCGTGTGGCTGATCATCCTGACGGCGAGCTCGCTGGTCATGTTTCTCAGCGCTGTCTCGCCAGAT TTCATCGTGGGGAATTCGATCATCTGCGGCGTGCTGGGAGCCTTCTTCCTCTTCTCCGGATACTTCATCCCCAAGGACAGTATTCCCAAGTACTGGATTT TCATGTACTACGTGTCGCTGTACCGGTACCCGCTTGATTCTCTGCTGACGAACGAGTACTGGAGTTCGAGAGAGGATTGTTTCCGGTGGTCGTCGTCTGG CAATGGGTGTTTGATGACGGGGAATGATGTGCTGAGGAGTAGAGGGCTGGAGAGGGATCTTCGGTGGGAGAATGTCGGGATTATGGTCGGGTTTTTCGTG TTGTACCGGGTTCTTTGTTGGGTCATTCTGGTTCGGAAGGCTTCAAGAACCACTATTTAA
AA sequence Show only first row Show all	>Lus10033637 pacid=23143496 polypeptide=Lus10033637 locus=Lus10033637.g ID=Lus10033637.BGIv1.0 annot-version=v1.0 MGQQVLEQPDSSHIRSSKYRRLSRKRQAAAHSHHRTPIASKSTNFSSPKLTCSSTYLTPAITLLQNSYSSYSFQPSSGISLFILLQPTMSSSCFNPPARQ LVEAADNQDSTFPSSISSSSYHLTVTNLSFTLTPKSSPSFCYHLPWRPKPEPIHILKSISFQAGNSKILAIVGPSGSGKSTLLRYISGRVTNSEFDPKAV AINSRGISSPSQLRKICGFVPQEDNLLPLLTVRETLMYSAKFKLKELTLKEKKEKVDGLLVELGLVRVAGSFVGDESCRGISGGERKRVSIGVDLISDPS ILILDEPTSGLDSSSALQVIEQLSSIARVKQRTIVISIHQPSYRIIQIIPGFLILSQGFAVHYGSLELLQNTIADLGFWIPDRLNPIEFSMEIIHSLEDS VKSQTLNLPELDTTTTTIHRYHQSDNLHSPESLIDFSEIANLCSRSWKIIYRTKQLLTARTMQALAGGFVLGSVYIKVRKHRHDDDNGGAIAERFGLFAF SLSFLLSSTVEALPIYLQERRVLMKEASRGSYRISSYVIANTVVFLPFLLVVAVLFSVPVYWLAGLNPSIAAFGFFTLIVWLIILTASSLVMFLSAVSPD FIVGNSIICGVLGAFFLFSGYFIPKDSIPKYWIFMYYVSLYRYPLDSLLTNEYWSSREDCFRWSSSGNGCLMTGNDVLRSRGLERDLRWENVGIMVGFFV LYRVLCWVILVRKASRTTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	0	1
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	1.0	0.9224
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	2.0	0.8731
AT2G04480			unknown protein		Lus10001750 [exp]	3.5	0.8634
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	3.7	0.8294
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	3.9	0.8665
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	4.6	0.8590
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	5.3	0.8667
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	6.9	0.8277
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10024347 [exp]	8.4	0.7801
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10013779 [exp]	9.3	0.8709

Compare expression of checked genes

Lus10033637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.