Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28010 149 / 5e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 117 / 5e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 112 / 4e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 110 / 1e-28 RPF2 rna processing factor 2 (.1) AT5G16640 107 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 107 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G46100 106 / 3e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 106 / 5e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 105 / 1e-26 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63230 102 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017684 [exp] 333 / 1e-111 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 121 / 4e-32 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 105 / 1e-26 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 105 / 2e-26 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032789 [exp] 101 / 7e-26 AT1G09820 250 / 4e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025942 [exp] 97 / 1e-25 AT1G62680 154 / 3e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 102 / 2e-25 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 102 / 2e-25 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 100 / 2e-25 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069600 [exp] 223 / 2e-69 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 120 / 4e-32 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 119 / 1e-31 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 115 / 3e-30 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G032100 [exp] 115 / 4e-30 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 114 / 5e-30 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 113 / 3e-29 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074700 [exp] 110 / 1e-28 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 110 / 2e-28 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 110 / 2e-28 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033640 pacid=23143526 polypeptide=Lus10033640 locus=Lus10033640.g ID=Lus10033640.BGIv1.0 annot-version=v1.0 ATGGAAATGATGTTGGAAAAGGGGAAGAAGAAAAAACCAGATGTTGTTTCTTACAATTCATTACTAATGGGACTTTGCAACAATGGTCAGGTTGAAGAGG CACTGAAGTTCTTCTTCAATGTGTTTAAGAAGGATCGGAATCTCATTGAGCCGGATGTGTTCACTTTCAACATTCTGATACAAGGGCTCTGCAAAAAAGG TTGCCTTGACAAAGCTATGGAGATTTACGATACGATGATCGCTCGTGGGGTTTCCGGTAATTTGATAACTTACAATGTTCTGATTGGGGAGCATCTAAAG TCTGGCTTAGTTGACGAAGCTATGTGTCACTGGAAACATGTTCATAAGCTCGGACTTGTTCCCAATTCAATGACGTATAGTTTCATGATCGATGGACTCT GTAAGATTTGTTTGCTTAATGTCGCGAAAGGACTCTTCACCAAGATGAAAATGCGTGGACTTGTCCCCACATTATCGGACTACAATTCGTTGGTGGCATC GCTATGTAAAGAAAGTAACTTGGAGTAG
AA sequence Show only first row Show all	>Lus10033640 pacid=23143526 polypeptide=Lus10033640 locus=Lus10033640.g ID=Lus10033640.BGIv1.0 annot-version=v1.0 MEMMLEKGKKKKPDVVSYNSLLMGLCNNGQVEEALKFFFNVFKKDRNLIEPDVFTFNILIQGLCKKGCLDKAMEIYDTMIARGVSGNLITYNVLIGEHLK SGLVDEAMCHWKHVHKLGLVPNSMTYSFMIDGLCKICLLNVAKGLFTKMKMRGLVPTLSDYNSLVASLCKESNLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	0	1
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033639 [exp]	3.2	0.7768
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	4.2	0.7764
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	12.6	0.7796
					Lus10033638 [exp]	12.9	0.6611
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	22.4	0.7139
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028011 [exp]	23.0	0.6713
AT5G41190			unknown protein		Lus10008488 [exp]	45.4	0.7227
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10029596 [exp]	45.8	0.7358
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	48.1	0.7405
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	52.5	0.6620

Compare expression of checked genes

Lus10033640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.