Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28010 120 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 114 / 3e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 111 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 110 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 110 / 9e-29 RPF2 rna processing factor 2 (.1) AT5G16640 109 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62914 109 / 2e-28 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62720 108 / 2e-28 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G16710 108 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 108 / 4e-28 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017684 [exp] 273 / 7e-89 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015397 [exp] 106 / 2e-27 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 105 / 3e-27 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028943 [exp] 102 / 3e-27 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 103 / 3e-26 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005303 [exp] 103 / 5e-26 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 102 / 5e-26 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014244 [exp] 102 / 8e-26 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 102 / 9e-26 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069600 [exp] 161 / 6e-47 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 113 / 4e-30 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G117600 [exp] 112 / 1e-29 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 111 / 4e-29 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 110 / 1e-28 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034200 [exp] 109 / 2e-28 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G130600 [exp] 107 / 6e-28 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 107 / 7e-28 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 107 / 1e-27 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G057900 [exp] 106 / 2e-27 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033641 pacid=23143268 polypeptide=Lus10033641 locus=Lus10033641.g ID=Lus10033641.BGIv1.0 annot-version=v1.0 ATGGAAGCATCAGCAAATTCGTTTACGTACGCAACGTTGATTGATTGTCTTTGCAAAGGTGGCAAATTGGATGATGCTTTGTCATTGTTGGAGGAGATGA AGAGGAAAAGTTTAAATGTTGATGTTGTTGTATACGGTTCACTGATCAATGGCTTCGTTAGTAGAGGACGGTACGATGACGGGAAGAAAATTTTCGATGA GATGATGCAGAAAGGGGTTATGCCGAATGTGGTTGTGTATAGCTACTTGATGAATGGTCTCTGTAAGATGAAGCAGTGGAATGTGGTGATGAATATGCTG ACGGCCATGTCCGAAATGGGAGTTGATCCTGATGTTGTTACTTATACTTATCTGATTAAAGGGTTGTGCAAAGATGGGAAGTCTAGTAAGGCGGTGGAAT TGTTTCGTCGGATCCAAGATAGGGACGAAGATGTTGAATGTTGTACTTTATAA
AA sequence Show only first row Show all	>Lus10033641 pacid=23143268 polypeptide=Lus10033641 locus=Lus10033641.g ID=Lus10033641.BGIv1.0 annot-version=v1.0 MEASANSFTYATLIDCLCKGGKLDDALSLLEEMKRKSLNVDVVVYGSLINGFVSRGRYDDGKKIFDEMMQKGVMPNVVVYSYLMNGLCKMKQWNVVMNML TAMSEMGVDPDVVTYTYLIKGLCKDGKSSKAVELFRRIQDRDEDVECCTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	0	1
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	4.2	0.7764
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	6.5	0.7996
AT3G22430			unknown protein		Lus10041204 [exp]	7.7	0.7789
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	14.1	0.7871
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	15.9	0.7461
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	26.3	0.7660
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	42.6	0.6774
					Lus10010599 [exp]	47.8	0.6746
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10003703 [exp]	56.1	0.6712
AT3G22430			unknown protein		Lus10041205 [exp]	60.2	0.7425

Compare expression of checked genes

Lus10033641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.