Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16730 340 / 2e-109 AtTPS02 terpene synthase 02 (.1) AT2G24210 337 / 2e-107 AtTPS10 terpene synthase 10 (.1) AT3G25810 335 / 1e-106 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 329 / 1e-104 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 329 / 1e-104 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16740 316 / 7e-100 ATTPS03 terpene synthase 03 (.1.2) AT1G70080 233 / 3e-68 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61680 221 / 6e-64 ATTPS14 terpene synthase 14 (.1.2) AT5G23960 211 / 1e-60 ATTPS21 terpene synthase 21 (.1.2) AT1G33750 204 / 2e-57 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038179 [exp] 558 / 0 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 555 / 0 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 535 / 0 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006356 [exp] 452 / 9e-152 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 438 / 2e-146 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006355 [exp] 436 / 3e-145 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10031352 [exp] 421 / 1e-144 AT3G25810 236 / 2e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018500 [exp] 333 / 4e-106 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 329 / 5e-104 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023006 [exp] 428 / 7e-143 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 421 / 9e-141 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 388 / 2e-127 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 368 / 1e-119 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 366 / 1e-118 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308200 [exp] 364 / 4e-118 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 364 / 5e-118 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 342 / 7e-113 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 348 / 3e-111 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 334 / 1e-106 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10033643 pacid=23143278 polypeptide=Lus10033643 locus=Lus10033643.g ID=Lus10033643.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTTGTCACTCATCGTCATCCTATCAACCTTCGTCGCCGTTTTGTTAACGACCACCACCGCTGTCATCGGAGTACAACTCCGGTACTGATGA TGGTGGCTTCTAACATGGAGGGAAATCAACAACACGGCCTCCGACGATCTGGAAACTACGAGCCGGGGATGTGGGGCATCGTCACCTCGCCTCGTGGTCA TCGCCATTTGGACGGCATCTATGACAATAGCGTTTCCACGGCACAGTATTCGAACCGCGGTTACGGGCCAGTAGTGATGAGAAGAATTGAAGAGCTGAAG AAGTACGTAAGGGGTCGTTTGGTGGAGGGCCAACTTGGTGATAATGATAAGGTGGCCACTACAAGGCTAGAGCTTATTGACGTTGTGCAAAGGTTAGGGT TGGGTTACCATTTTGAGAAGGAGATTTGTGATGCTTTGGAAGAAATTGTTGCTCATGAAACGTTGTCGGTTTGTCTTTACACTTGTGCCCTCCGCTTCAG ACTGCTCAGACAATTTGGTCTTTTCGTATCGCAAGATGTATTCAAGAAATTTAGAGATGACGACGGAGAATTCAAGCCACAAGTAGCGACGGACATCAAA GGGCTACTAGCATTGTACGAAGCCTCGCATCTTAGGGTGATTGGAGAAGATATTATGGAGGATGCAAAGGCTTTCGCTTTTAGGCACCTTGCGGATCACA ACAATGGCGGTCATGTTGGCTCGAACCTGATAGCGGAATCAGAACAGTCGGTTGATCATATCCAGTTCTGTCAGTGTAATTCAACTCTACTCAGTAAGCA AGTGGAGCACGCCTTGCAGCTTCCCTTAAACTGGAGGATGCAAAGGGCCGAGACCAATTGGTTCGTCGAGTTATGCCAAGAAACGCGACACGATAACAGC ATCAACCCACGCCTCCTTGAGCTCGCCAAGTTGGATTTCAACTTGGTCCAACAAGTTCACCGGAACGAACTAGAGGAGCTAACAAGTTGGTGGAAAGACT TGGGACTGAAAGAAGAGATGAAATTTGCTAGAGATCCACTGGTGGAGAGTTTTCTATGGGCTATCGGAATGACATCACACCCTGAAAACGGAGATTGCAG AAAAGCCATGTCCAAAGTTGCAATCCTTGTCCACATAATTGATGATGTCTACGATGTTTATGGCTTCCTCGACGAACTCGAGCTTTTCACCGCCGCCATC GAGAGGTGGGATACTAGTGAGTTGGACAAGCTTCCTCATTACATGCAACTATGCTTCATGGCAGTGTACAATACTGCAAACCAAATTTCTAATCATTTCG GTTTAAACCAACCAGGGTTCAACAGCTTGCCTTACATTAAAAAATCGTGGAGAGATCTCTGCCGTTCCTACTTGGAAGAAGCAAGATCCTACCGTTCAGG AAGCGACCAAACGCTGGAGCAATACCTGAACATCGCTTGGAAATCAGTCGCATGCGACGTCGTTTTAATCCACGGCTACCTTTCATCCGCCCTGACCGGT ACCCTAACCGAAGCTCTGCATCTACTGACATGGTCCGATCCGGACCTCACTCGTTTGGCATCGATAATTGTCCGTTTAACGAACGATCTTGCCAGCTCCA AGGGAGAGCTAGAGAGGGGAGACGTGGTGAAAGCAGTGGAGTGCTACATGAAAGAGGAAGGAGTGTCGGAGGAAGTTGCTCGAGGCCATATGGAGCGGTT GATCGGTGAGACATGGAAAATGATTAACGACGATGTCTTGTTCTCTCAACCATTTTCTAACGGTAGTTGGTTTCGTCGTCTCCCTCCCACTTACGTGGAA TTGGCGATCAATGTGGCTCGAACTAGCCACTACATGTATAGGCACGAAGTAACGAGAGGATCCTCCGCTCCCAAGGACAAAGACAGAGCTGTCTCTTTGC TTTTCGATCCGCTTTGA
AA sequence Show only first row Show all	>Lus10033643 pacid=23143278 polypeptide=Lus10033643 locus=Lus10033643.g ID=Lus10033643.BGIv1.0 annot-version=v1.0 MAFLVTHRHPINLRRRFVNDHHRCHRSTTPVLMMVASNMEGNQQHGLRRSGNYEPGMWGIVTSPRGHRHLDGIYDNSVSTAQYSNRGYGPVVMRRIEELK KYVRGRLVEGQLGDNDKVATTRLELIDVVQRLGLGYHFEKEICDALEEIVAHETLSVCLYTCALRFRLLRQFGLFVSQDVFKKFRDDDGEFKPQVATDIK GLLALYEASHLRVIGEDIMEDAKAFAFRHLADHNNGGHVGSNLIAESEQSVDHIQFCQCNSTLLSKQVEHALQLPLNWRMQRAETNWFVELCQETRHDNS INPRLLELAKLDFNLVQQVHRNELEELTSWWKDLGLKEEMKFARDPLVESFLWAIGMTSHPENGDCRKAMSKVAILVHIIDDVYDVYGFLDELELFTAAI ERWDTSELDKLPHYMQLCFMAVYNTANQISNHFGLNQPGFNSLPYIKKSWRDLCRSYLEEARSYRSGSDQTLEQYLNIAWKSVACDVVLIHGYLSSALTG TLTEALHLLTWSDPDLTRLASIIVRLTNDLASSKGELERGDVVKAVECYMKEEGVSEEVARGHMERLIGETWKMINDDVLFSQPFSNGSWFRRLPPTYVE LAINVARTSHYMYRHEVTRGSSAPKDKDRAVSLLFDPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	0	1
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	4.9	0.8197
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	5.3	0.7748
AT1G24160			unknown protein		Lus10029213 [exp]	6.2	0.7699
AT2G46940			unknown protein		Lus10038023 [exp]	16.7	0.7395
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	17.0	0.7243
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	17.1	0.7485
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10003034 [exp]	17.7	0.7286
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	19.1	0.7458
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	20.2	0.7443
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	27.0	0.7282

Compare expression of checked genes

Lus10033643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.