Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 148 / 4e-40 HD HB-1 homeobox-1 (.1) AT5G44180 146 / 2e-39 HD Homeodomain-like transcriptional regulator (.1.2) AT4G03250 74 / 9e-15 HD Homeodomain-like superfamily protein (.1) AT4G12750 48 / 4e-06 Homeodomain-like transcriptional regulator (.1) AT1G17920 46 / 1e-05 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 45 / 3e-05 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G79840 43 / 0.0002 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G17710 42 / 0.0004 HD HDG4 homeodomain GLABROUS 4 (.1) AT4G16780 40 / 0.0008 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017688 [exp] 466 / 6e-168 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10039870 [exp] 202 / 6e-59 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 201 / 2e-58 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 144 / 7e-42 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 142 / 3e-41 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10015325 [exp] 131 / 4e-34 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 125 / 4e-32 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10016078 [exp] 57 / 6e-09 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012302 [exp] 52 / 4e-07 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016200 [exp] 213 / 2e-62 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 208 / 8e-61 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 153 / 6e-42 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 143 / 2e-38 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.009G071700 [exp] 66 / 6e-12 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 62 / 9e-11 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.012G038500 [exp] 47 / 9e-06 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.015G034100 [exp] 45 / 3e-05 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G173300 [exp] 45 / 4e-05 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.001G184100 [exp] 44 / 7e-05 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10033644 pacid=23143337 polypeptide=Lus10033644 locus=Lus10033644.g ID=Lus10033644.BGIv1.0 annot-version=v1.0 ATGGAGGATTCCGGCGGCGCGCGTCGCCGCTCTTCTTCACCTCCTGCCGCCGGTGATGCGGAGGTTGACCAGAAGAAGAACAGGAAGACGAAGAAACACG ATGTGGAAAACAAGTCCAAGCGTAAACTAAAAACCGCTTACCAGCTGGAGGTTCTCGAGAAAACTTACTCTGAGGTAGCGTACCCATCGGAGGCAGCAAG AGCTGGGCTATCGGAGCAGTTAGGGCTATCCGATAGACAGTTGCAGATGTGGTTCTGTCACCGGCGGGTTAAGGACCGGAAACGGCAACGCGAGGATCCT CCATCGCCTGTGGAGGAAATCGAAGCTGCAAGTGAGGCATGCAGGAAGCATTCACCAGCATCTGCTTCGCGCTCGAATTCGCTTGGTATGGATCCGCCGC CGCGTCCATGGAGTCGCAGCACTTCTGAGGTGGCTGTTCCAAGGAATTGTGCTGATTTATCAACTGTGGAGAGGTACTATGAACCGAGACGGTCGGTGGC AGAGCTTAGAGCAATGTTGTTTGTTGAGGAACAATTGGAGGAACCAATGAGGGAGGATGGTCCTGTGCTTGGTGTTGAATTTGACCCCTTGCCGCCGGAT GCATTTGCTGAACCTATGCGGACTACTGCGATAGTGGTGCATGAGGCAGCACTGGCACGGCATCTCGGACCCAACATGTATGAACAGTATGATCTTAAAT CAATCAAGCAGCCGAAATGGTTATCGAGAGACCAATGGAGTAGTAAGAGGAGAAGCCTGCACAAACAGCAGATGCAGACCCTAAATCCAAGTTACAAGAA GTACAGCGATCGGAGTCACTCCGATGACAGCTAA
AA sequence Show only first row Show all	>Lus10033644 pacid=23143337 polypeptide=Lus10033644 locus=Lus10033644.g ID=Lus10033644.BGIv1.0 annot-version=v1.0 MEDSGGARRRSSSPPAAGDAEVDQKKNRKTKKHDVENKSKRKLKTAYQLEVLEKTYSEVAYPSEAARAGLSEQLGLSDRQLQMWFCHRRVKDRKRQREDP PSPVEEIEAASEACRKHSPASASRSNSLGMDPPPRPWSRSTSEVAVPRNCADLSTVERYYEPRRSVAELRAMLFVEEQLEEPMREDGPVLGVEFDPLPPD AFAEPMRTTAIVVHEAALARHLGPNMYEQYDLKSIKQPKWLSRDQWSSKRRSLHKQQMQTLNPSYKKYSDRSHSDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	8.0	0.8273
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10019636 [exp]	9.7	0.8013
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	11.2	0.8221
AT1G11880			transferases, transferring hex...		Lus10000535 [exp]	15.0	0.8108
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	16.1	0.8306
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	17.9	0.8153
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10037839 [exp]	26.4	0.7977
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	31.5	0.7966
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	34.7	0.8163
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	40.6	0.8089

Compare expression of checked genes

Lus10033644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.