Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05970 174 / 4e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017690 [exp] 352 / 4e-125 AT1G05970 199 / 5e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030000 [exp] 211 / 1e-69 AT1G05970 179 / 4e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10033646 pacid=23143539 polypeptide=Lus10033646 locus=Lus10033646.g ID=Lus10033646.BGIv1.0 annot-version=v1.0 ATGGATTCGACAAGTCCAGAAACGGAGTACAAAGCCTTTCTGGAGAAGGTGGACCGAACTGTTTACATTGACAACCTCTCGCCACAGGCCAACGAATCCG TGATAAAAACCGGTTTGGATCAGTTCGGCAACGTGAAGAGCATCTCTTTCATCGCAAACTACATGGACCCGAGGAACAGCATGCGATGTGCATTGGTCGA GATGGAAGCTCGCGATCAAGCAAGAAACGTCATCGCAATGCTGAGCGAATCCCCGTTCCTGATGGCCGGCATGCCTAGACCGGCAAGGGCACTCAAGGCT GAGGTCGAGATGTTCGATGATCGCCCGAGTAAGCCCGGTAGGAAGATGCAGTTCAGGTGGGTGGAACCGAAAGACGCTGATTTCAACGTGTTGCAAGAAA TGAAGCGTGCTGTCCAAAAGCATGCGGCCGAGGAATCATTCCTGCATAAGACGCAGCTGGAGGAAGAAGAGAAGCTGCACAAACAGCAGTTGGAGACCCT GAAAACAAATTACAAGAAGTACGAAATGACCAATGGTGTAATCGGCGATGGTGTAGCTCGTCGGGTTGCGGAGAGGTACGGGATGAGAGTTGCAGATGAT CAAGATGGTGGTCCTCTTTGA
AA sequence Show only first row Show all	>Lus10033646 pacid=23143539 polypeptide=Lus10033646 locus=Lus10033646.g ID=Lus10033646.BGIv1.0 annot-version=v1.0 MDSTSPETEYKAFLEKVDRTVYIDNLSPQANESVIKTGLDQFGNVKSISFIANYMDPRNSMRCALVEMEARDQARNVIAMLSESPFLMAGMPRPARALKA EVEMFDDRPSKPGRKMQFRWVEPKDADFNVLQEMKRAVQKHAAEESFLHKTQLEEEEKLHKQQLETLKTNYKKYEMTNGVIGDGVARRVAERYGMRVADD QDGGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	0	1
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	1.0	0.9026
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	1.4	0.8979
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	3.0	0.8065
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	5.2	0.8553
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	6.0	0.8166
AT3G48210			unknown protein		Lus10042089 [exp]	9.6	0.8366
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	10.2	0.8257
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	12.6	0.7929
AT1G16510			SAUR-like auxin-responsive pro...		Lus10040643 [exp]	15.2	0.7628
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	16.1	0.8135

Compare expression of checked genes

Lus10033646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.