Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51990 53 / 6e-09 O-methyltransferase family protein (.1.2) AT4G35160 53 / 8e-09 O-methyltransferase family protein (.1) AT4G35150 50 / 6e-08 O-methyltransferase family protein (.1) AT1G62900 48 / 3e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G63140 48 / 3e-07 O-methyltransferase family protein (.1.2) AT1G76790 48 / 3e-07 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1) AT3G53140 46 / 1e-06 O-methyltransferase family protein (.1) AT1G21130 46 / 2e-06 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT5G53810 45 / 4e-06 O-methyltransferase family protein (.1) AT1G21100 44 / 9e-06 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017691 [exp] 197 / 3e-63 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10018628 [exp] 136 / 2e-39 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 132 / 3e-38 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10033656 [exp] 129 / 1e-36 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10001510 [exp] 126 / 8e-36 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017699 [exp] 119 / 6e-33 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10008538 [exp] 117 / 2e-32 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10017695 [exp] 108 / 3e-30 AT4G35150 140 / 6e-40 O-methyltransferase family protein (.1) Lus10033655 [exp] 107 / 1e-28 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121800 [exp] 131 / 2e-38 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 132 / 4e-38 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 131 / 6e-38 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 131 / 6e-38 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 131 / 1e-37 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 128 / 1e-36 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 127 / 3e-36 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 124 / 6e-35 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 117 / 3e-32 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 115 / 7e-32 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033647 pacid=23143476 polypeptide=Lus10033647 locus=Lus10033647.g ID=Lus10033647.BGIv1.0 annot-version=v1.0 ATGGCGAACGCCATCGCAGTGGCGTTCCCCCCCGTCGGTTGCATGGTGCTCGATCTGCCCCATGTCGTCGCCGGTTTGGAAGACAATGGGAACGTGAAGT ATATAGCCGGCGACGTGTTTCAGGCAATTCCTCCGGCCGACGCCATTTTGCTCAAGCTTGAAAATATTGAAGAAGTGCAAAGAAGCATTGTCGAGAGGAC GAACAAGGGTAAAACAGGGAAAATGATTATCATAGATATGGTGGTGGATGATGAAAGATACTGTCTCGACAGCAGGATGCTGGTAGCTCAAAAGGGCCAG GAGAGGAATAAAGGGGAATGGGTGAAGCTATTTGCCGATGCTGGATTCACCGGATACTACATCAACCCGATTCTTAGGACGAGAGCTCTTATCGAGGTCT ATCCTTAG
AA sequence Show only first row Show all	>Lus10033647 pacid=23143476 polypeptide=Lus10033647 locus=Lus10033647.g ID=Lus10033647.BGIv1.0 annot-version=v1.0 MANAIAVAFPPVGCMVLDLPHVVAGLEDNGNVKYIAGDVFQAIPPADAILLKLENIEEVQRSIVERTNKGKTGKMIIIDMVVDDERYCLDSRMLVAQKGQ ERNKGEWVKLFADAGFTGYYINPILRTRALIEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	1.7	0.9061
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	1.7	0.9276
					Lus10040545 [exp]	2.2	0.8954
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	2.4	0.9150
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	2.8	0.8156
					Lus10019815 [exp]	3.5	0.8839
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	4.0	0.8976
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	4.2	0.8096
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	4.5	0.7954
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	4.6	0.8204

Compare expression of checked genes

Lus10033647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.