Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10385 833 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 691 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10180 287 / 2e-85 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017692 [exp] 1365 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10034843 [exp] 721 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 717 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 715 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033387 [exp] 434 / 6e-142 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10040609 [exp] 292 / 3e-87 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 291 / 9e-87 AT1G10180 858 / 0.0 unknown protein Lus10022896 [exp] 165 / 6e-42 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 132 / 9e-32 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063700 [exp] 934 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.010G249900 [exp] 728 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 712 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.012G120000 [exp] 304 / 2e-91 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 297 / 5e-89 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 250 / 3e-73 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 167 / 1e-42 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10033648 pacid=23143395 polypeptide=Lus10033648 locus=Lus10033648.g ID=Lus10033648.BGIv1.0 annot-version=v1.0 ATGAGAGAATTGAGCATCGGAGACTCGGCGGAGCTGGAAGAGAACCTTCCGCTCAAAGAACGCCTCAAAGCTTTCAAGAGCTCCAGCTTCGATCCTGACG CTTATTTCACCACACGATGTCAGACCATGAACGAGAAGGAAATTCGTCACCTGTGTTCGTACCTCATCGAGCTGAAGAAAGCCTCCGCCGAGGAAATGCG GAAGAGCGTCTACGCCAATTACGCCGCCTTCATCCGGACATCAAGGGAGATCACAGATTTGGAAGGGCAGCTAATGTCCATGAGGAATCTTCTGTCGAAC CAGGGGAATCTAGTACACGCACTAGCCGAACAAGAACGAATCGACTCGTTATGGGTTGGTTCAGATCAGACATTGAAAGAGGATCTGTCTCAAATCGACA AGATGGAGCTTTCCAAAACAGAGGAATGGCTGATGGAGTTCTCCAACACTCTGGACGTCCTGCTAGCCGAGAGGCGAATGGACGAAGTCATGAAAGCACT CCTCAAAGGCGAAATGCTGGTCGAAGATGCGAGCGAAGAGCCTGATTTGAACCCCAAGTTTCTCGCTGCAATGCAGGCTTCGATCACCGAACAAAGAATG AGGTTTGCTGACCAGCTCTCCGATACGATCAGTCAGCCTTCGACGAGAAGGCTGGAGCTTCGATCGGCCGTCCAAGCCCTCAAGGGGCTCGGAGACGGCC CTCGGGCCCACACATTGTTGCTTCAGTATCACCAGAAGAAGCTGCAGTCTTCCCTGAGGAGCATCCGTTCTTCTTCCAACGGTTCCTATGGAGGCGGTGG GAGCTCGTACGCAACGGTGATTTCGCAGTTTGTGTTCTCGACGATCGCTCGAGCAATGAGTGACTCGATGACAGTGTTTGGAAAGGAGTCGGCCTACACA TCCGAGCTCGTTTCATGGGCTGTCAAGCAAACCGAGTCATTCGCTCTGCTTTTGAAGAGGCATGTCCTGGCTTCATCGGCCGCTACTGGCGGACTTAGGG TCTCTGCTGACTGTATGCAGGTGTGTGTGGGTCACTGTTCGCTGCTCGAAGCTCGAGGACTGTCGCTCTCGCCGGTGCTCTTGAGGGTGTTTCGATCGAG CGTCGAGCAGGCGTTCCATGCTAATTTGAAGAAGATTGAACATAGCACTGCTGCATTGGCTGTTTCGGATGATTGGGTTCTTTCATTTTCGCCTGCTGGT GGGAAGGCCATGGCTTCCCCTGCACCTCTTAGTAATTCTGTGGGATCACAGCCGAAGCTTTCATCTAGTGCCAACAAATTCAACTCAATGGTCCAGGAAT TCCTGGAAGATATCGTACCATTGGAGTGCCTGCAGCTGGACGGACCAGCGCTCGAAGGCGTTCAGCGCATCTTCAACTCGTATGTCGATCTGTTAATCCA GGCATTACCGGGCTCAACAGATACCGAGGAGAACCTGGAAGGTTTGGGCAGGGTGGTTCGACCAGCAGAGACAGAAATACAGCAACTAGCATTGCTAGCA AATGCATCACTGTTGGCGGACGAACTTCTCCCCCGAGCTGCAACGAGGCTTTTATCATCCAACCATAGAATAGATGAACAGTCCAGGAGGGGATCGGACA AGCCGACTCATCTACCCGAGCAAAGGGAATGGAAGAGGAAGCTTCAGCGATCCGTGGATCGATTACGAGATAGCTTCTGCAGACTACATGCTCTAGAGCT TATCTTCACCGACGAGGGCGACACTAATCTGAATTCACATACTTATACCAGTATGGATGATCACACTGAGGAGCCTGAATGGTTCCCATCTCCCATTTTT CAGTGCCTACAGACGTACTTTTCTAACGAAGGGGAACTAGGTATTTGTTTTGTGTTCGTGATTGCGTTTAATTCTCGACAACTGCCTGCTTTTTTCCAGC TTGTGTTCACGAAAATTACGAACTTGGCAAGCGTAGCGACGGATGTGTTTGTGGGTAGGGAGAGATTTGCAACTGTTCTGTTGATGAGACTGATGGAGAC TATAATCCTATGGCTCTCTGATGATCAAGCATTCTGGGAAGAGATTGAGCAAGGATCCAAACCGTTGGGACCTTTTGGCCTTCAACAGTTGTATCTGGAC ATGGAGTTCGTGTTGATCTTCGCATCGCAAGGCCGCTACTTGTCTAGAAGTCTACATCAAGTCATTAAAGACATCATCGCCAGAGCGATTGATGCTGCCT CAGCTACTGGTGTAGATCCATACAGTGTGTTACCTGAGGAGGATTGGTTCAATGAGGTCTCTCAGATAGCCATCAAAATGCTGGCCGGGAAATCGGAGTT TGCGAATATGGATCGAGAGGTTGCTAGCCCTACTGCATCCATCTCAGCATCATCTGTGATATCAGATGCTAACTAG
AA sequence Show only first row Show all	>Lus10033648 pacid=23143395 polypeptide=Lus10033648 locus=Lus10033648.g ID=Lus10033648.BGIv1.0 annot-version=v1.0 MRELSIGDSAELEENLPLKERLKAFKSSSFDPDAYFTTRCQTMNEKEIRHLCSYLIELKKASAEEMRKSVYANYAAFIRTSREITDLEGQLMSMRNLLSN QGNLVHALAEQERIDSLWVGSDQTLKEDLSQIDKMELSKTEEWLMEFSNTLDVLLAERRMDEVMKALLKGEMLVEDASEEPDLNPKFLAAMQASITEQRM RFADQLSDTISQPSTRRLELRSAVQALKGLGDGPRAHTLLLQYHQKKLQSSLRSIRSSSNGSYGGGGSSYATVISQFVFSTIARAMSDSMTVFGKESAYT SELVSWAVKQTESFALLLKRHVLASSAATGGLRVSADCMQVCVGHCSLLEARGLSLSPVLLRVFRSSVEQAFHANLKKIEHSTAALAVSDDWVLSFSPAG GKAMASPAPLSNSVGSQPKLSSSANKFNSMVQEFLEDIVPLECLQLDGPALEGVQRIFNSYVDLLIQALPGSTDTEENLEGLGRVVRPAETEIQQLALLA NASLLADELLPRAATRLLSSNHRIDEQSRRGSDKPTHLPEQREWKRKLQRSVDRLRDSFCRLHALELIFTDEGDTNLNSHTYTSMDDHTEEPEWFPSPIF QCLQTYFSNEGELGICFVFVIAFNSRQLPAFFQLVFTKITNLASVATDVFVGRERFATVLLMRLMETIILWLSDDQAFWEEIEQGSKPLGPFGLQQLYLD MEFVLIFASQGRYLSRSLHQVIKDIIARAIDAASATGVDPYSVLPEEDWFNEVSQIAIKMLAGKSEFANMDREVASPTASISASSVISDAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	1.0	0.9566
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	1.4	0.9317
					Lus10019456 [exp]	2.0	0.9125
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	2.4	0.9150
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	3.5	0.8070
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	4.2	0.8558
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	4.2	0.8418
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	5.3	0.8521
					Lus10040545 [exp]	5.5	0.8364
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	6.2	0.8017

Compare expression of checked genes

Lus10033648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.