Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03870 216 / 3e-70 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 209 / 8e-68 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G20520 203 / 3e-65 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G03170 154 / 6e-46 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 131 / 3e-37 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G04780 97 / 4e-24 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G60900 74 / 4e-15 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 69 / 2e-13 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G46550 62 / 4e-11 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 58 / 1e-09 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017696 [exp] 386 / 3e-137 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10019929 [exp] 150 / 2e-44 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 142 / 2e-41 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 117 / 1e-31 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 116 / 1e-31 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 113 / 4e-30 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 113 / 5e-30 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036112 [exp] 106 / 1e-27 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 103 / 2e-26 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120600 [exp] 192 / 2e-61 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.019G093300 [exp] 184 / 5e-58 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.006G129200 [exp] 149 / 4e-44 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.016G088700 [exp] 147 / 1e-43 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 124 / 1e-34 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 122 / 5e-34 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 119 / 2e-32 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.002G223300 [exp] 115 / 7e-31 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G151300 [exp] 115 / 7e-31 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G151366 [exp] 115 / 8e-31 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10033651 pacid=23143534 polypeptide=Lus10033651 locus=Lus10033651.g ID=Lus10033651.BGIv1.0 annot-version=v1.0 ATGGCAATGTACAACTCTCTCTGCTTCCTCACTTCCTTTCTACTCATCCTATCAATCCAAACCAATGCCCAAACCCCCTCAGCTCCGGCCCCCGGTACAC CCGGACCGGTCAACCTAACCGCAATCCTTGAAAAGAGCAACCAGTTCACCACATTCCTCCGCCTCCTTGGCACAACCCAAGTCGGGAACCAGATCCAGAA CCAGCTCAACAGCTCCACGGAGGGAATGACCGTTTTCGCCCCCACCGACAACGCCTTCCAGAACCTCAAGTCGGGCAGCCTCAACGGGCTCTCAAACCAA CAGCAGGTCCAGCTCGTCCTCTACCACGTGGCACCCAAATTCTACTCCCTGAGCAACCTCCTGCTGGTACCCAACCCGGTCCCGACCCAGGCCTCGGGCC AAGATGGTGGCGTTTATGGGCTAAACTTTACTGGTCAAGGAAACCAGGTCAACGTCTCGACCGGAGTGATCGAGACCCAAATAAATAACCCGCTCAGCCA GAGCTTCCCTCTGGCTGTTTATCAAGTGGACAGAGTTTTGCTGCCTGCGGAGCTGTTTGGTGCTCCGGCCCCCGGTGGTGCTCCGAAGAAGACCACACCT TCCACGTCGGACGAAAATACGCCCGACACGACGGTCGACTCGGAGCCTACTGGCCCGACTGCGGCTGACAATGGTGCTGGCTCGAATTTTGTTGGGTTTG GTTTTGCAATTGGGGTCGGATTGCTCTGTTCTGGAGCTCTGTTTTGA
AA sequence Show only first row Show all	>Lus10033651 pacid=23143534 polypeptide=Lus10033651 locus=Lus10033651.g ID=Lus10033651.BGIv1.0 annot-version=v1.0 MAMYNSLCFLTSFLLILSIQTNAQTPSAPAPGTPGPVNLTAILEKSNQFTTFLRLLGTTQVGNQIQNQLNSSTEGMTVFAPTDNAFQNLKSGSLNGLSNQ QQVQLVLYHVAPKFYSLSNLLLVPNPVPTQASGQDGGVYGLNFTGQGNQVNVSTGVIETQINNPLSQSFPLAVYQVDRVLLPAELFGAPAPGGAPKKTTP STSDENTPDTTVDSEPTGPTAADNGAGSNFVGFGFAIGVGLLCSGALF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	0	1
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	1.4	0.9626
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	2.0	0.9699
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	2.8	0.9306
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	3.2	0.9431
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	3.9	0.9586
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	5.7	0.9216
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	6.0	0.9451
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	8.1	0.9043
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027972 [exp]	8.4	0.8684
AT2G47030		VGDH1	Plant invertase/pectin methyle...		Lus10011760 [exp]	9.6	0.9056

Compare expression of checked genes

Lus10033651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.