Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62700 54 / 4e-08 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT3G10490 50 / 3e-07 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G12260 51 / 4e-07 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT2G33480 50 / 4e-07 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT3G03200 50 / 6e-07 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G71930 50 / 7e-07 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT5G17260 49 / 1e-06 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G77450 49 / 1e-06 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G13180 49 / 1e-06 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT1G65910 49 / 2e-06 NAC ANAC028 NAC domain containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033650 [exp] 287 / 2e-99 AT3G03200 50 / 8e-08 NAC domain containing protein 45 (.1) Lus10014342 [exp] 139 / 8e-41 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10019638 [exp] 113 / 5e-30 AT1G12260 59 / 4e-10 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10035400 [exp] 112 / 9e-30 AT1G79580 61 / 1e-10 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10017697 [exp] 109 / 4e-28 AT2G24180 135 / 6e-36 cytochrome p450 71b6 (.1) Lus10033676 [exp] 77 / 6e-16 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10022965 [exp] 69 / 3e-13 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 64 / 2e-11 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10031639 [exp] 62 / 1e-10 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G029200 [exp] 72 / 1e-14 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 70 / 2e-13 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 68 / 9e-13 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 64 / 1e-11 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.019G063000 [exp] 60 / 1e-10 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G220500 [exp] 57 / 2e-09 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1) Potri.013G113100 [exp] 54 / 3e-08 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.015G002900 [exp] 53 / 8e-08 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.001G120000 [exp] 53 / 9e-08 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.018G095000 [exp] 52 / 2e-07 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033652 pacid=23143331 polypeptide=Lus10033652 locus=Lus10033652.g ID=Lus10033652.BGIv1.0 annot-version=v1.0 ATGGACGCCGATCAGATAATGGAGAACAGGAAGAACTTCTTCGCTTCCTTAAACCTCTCTTCCGCAATCCGGTTCCGTCCCACCGAGAAGCAACTAGTAG GCCAGTTTCTCCTTCGCAAGATCCGAGGGACGTGCGATCCGGATGACCCCATAGTGGAGGCCGACTTGTACGCTACAGAGCCGTCGCTTCTCTGGGAAAC TTACTCGTCGTCTCAAGAACAATCTCATGGTGCTGACGTGGATGACAAGGATGAGATTCTTTACTTCTACACCAAGCTCAAGAGCAAGAAGCTCTCCAAC GGCGAGAGGAAGTCGTCCAGGATCGACCGAGCAGTGGCCGACGGGAAAGGCGGCACGTGGCATCAGGAGGCCGTTTCCAAGATCTACGTCCGCCATCATC TCGTAACCAAGAAGAAGAACAAACAAGGTAGTATTAGTACTGGTACCACTACTACTAGTCTAATGGAGTTCGAGAAGAAGCGGTTCAGCTACAAGAACCC TGAGAACGCCAAGGAGCATGGTTGTTGGATCATGCACGAGTACAGCTGTCTCGAAAAGAGGGCCGGTTTCTCGATTGATTGGGTCATCTGCCGTCTACAC AAGAACCCGAAGTACTCTAGAGCCAAATCATCATCGTCGTCGATGTTATTGCCCTCGTCTCCTGATTCTATTCTTGATTATGATCAACATGGTGGTGATG ATCATCGTAGTAATCCGAAACGGAGCAAGGTGATTAATAGTGCAACAGATGACGAGCAAGGGAGATTGAAGATGGCGTCCTACTATCAGAGTTTCGAGAG CTGCCTTCAGTGA
AA sequence Show only first row Show all	>Lus10033652 pacid=23143331 polypeptide=Lus10033652 locus=Lus10033652.g ID=Lus10033652.BGIv1.0 annot-version=v1.0 MDADQIMENRKNFFASLNLSSAIRFRPTEKQLVGQFLLRKIRGTCDPDDPIVEADLYATEPSLLWETYSSSQEQSHGADVDDKDEILYFYTKLKSKKLSN GERKSSRIDRAVADGKGGTWHQEAVSKIYVRHHLVTKKKNKQGSISTGTTTTSLMEFEKKRFSYKNPENAKEHGCWIMHEYSCLEKRAGFSIDWVICRLH KNPKYSRAKSSSSSMLLPSSPDSILDYDQHGGDDHRSNPKRSKVINSATDDEQGRLKMASYYQSFESCLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10033652 [exp]	0	1

Compare expression of checked genes

Lus10033652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.