Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 155 / 6e-44 O-methyltransferase family protein (.1) AT4G35150 142 / 2e-39 O-methyltransferase family protein (.1) AT1G51990 135 / 3e-36 O-methyltransferase family protein (.1.2) AT5G54160 127 / 2e-33 ATOMT1 O-methyltransferase 1 (.1) AT1G33030 105 / 1e-25 O-methyltransferase family protein (.1) AT3G53140 103 / 7e-25 O-methyltransferase family protein (.1) AT5G53810 96 / 4e-22 O-methyltransferase family protein (.1) AT1G77520 95 / 2e-21 O-methyltransferase family protein (.1) AT1G21130 94 / 3e-21 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G63140 91 / 5e-20 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033655 [exp] 581 / 0 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10039744 [exp] 292 / 9e-97 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10018526 [exp] 285 / 6e-94 AT4G35160 176 / 1e-51 O-methyltransferase family protein (.1) Lus10033656 [exp] 281 / 2e-92 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10008538 [exp] 280 / 1e-91 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10017699 [exp] 276 / 3e-90 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018628 [exp] 273 / 3e-89 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 271 / 1e-88 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 261 / 2e-84 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 302 / 8e-101 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 300 / 4e-100 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 300 / 4e-100 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 296 / 2e-98 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 295 / 4e-98 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 283 / 3e-93 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 280 / 3e-92 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 275 / 2e-90 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 267 / 8e-87 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 262 / 3e-85 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10033653 pacid=23143421 polypeptide=Lus10033653 locus=Lus10033653.g ID=Lus10033653.BGIv1.0 annot-version=v1.0 ATGGAAGGAAATTTGCTGGAGAATATGACCGTCGACGAGCTTCTTAAAGCTCAGGAACATGTCTGGAACTGCTCCTTCAACTACATCGTCACAATGTGCC TCAAATGCGCCGTCCAGCTTCGAATCCCCGACGCCATCCACCGCCATGGGTCGCCGATGACACTCTCCGACCTCATCTCCGAACTCCCGCTGCACCCTAT GAAAACAGACGCCCTCCGCCGTGTCTTGCGCCTCCTCGTCCAGGCCGGCTTCTTCACCGCCGTCAAACAAGGACCAGGAGAAGAACATTACAGTCTCACC CCGGCAACGAGGCTCCTCCTCGAGGGTGTACCGGGGTCGGCGGCCCCGCACATCTTCCTCCACACGGATCCCAAGACGGTGTCGTCATGGGGGATGCTGA GCTGGTGGTTCCAGATGAGCGACAACCCGGTCCCCTACGAGGGTGGCAGCGACGGCGTGTCGTTCTGGGACAATCTTAAGAAGGATCCGGAGCAGAAGAA GCTGTTCTTCGACGCCATGGCCGGAGATTCAGAGTTGGTAGCTAGTGTTCTGGCGTCGGAGGATTACCGTAAGGAAGTGTTCCAAGGCGTCAGGACGGTT GTTGACGTCGGCGGCGCCACGGGGGTGTTCGCCGTCGCCATGGCTAAGGCGTTTCCCGATGTGAAGTTTATTCTGTTTGATCGTCCTCACATTGTTGAGA ATTTGAAGGACGGCGAGGTTGAGAATCTGGTGGTTGTTGGTGGAGATATATTTCAGGATCCAATTCCTCCCGCTGATGCTGTCCTTCTCAAGTGGACTCT TCACGATTGGGACGATGAAAAGTGCGTAAAGATCCTGAAGAGTTGCAGAGAAGCAGTGTCGACGACGGCGATGACCGAGCGAAAGAAAAGGAAGGTGATC ATCATCGATATGGTGGTGGACAACGACGAACCGTCTCAAATTCAACTGTGTTTCGATCTACTAATGATGGCTACTTTCAATGGCAAAGAACGAACCAAAG ATGAGTGGAAGATCCTTTTCGATTCGGCTGGGTTCAGTGGCTACAAGATCGTACGTTCTTTGGGGCCTAGGTCTATCATTGAAGCTTATCCTTAG
AA sequence Show only first row Show all	>Lus10033653 pacid=23143421 polypeptide=Lus10033653 locus=Lus10033653.g ID=Lus10033653.BGIv1.0 annot-version=v1.0 MEGNLLENMTVDELLKAQEHVWNCSFNYIVTMCLKCAVQLRIPDAIHRHGSPMTLSDLISELPLHPMKTDALRRVLRLLVQAGFFTAVKQGPGEEHYSLT PATRLLLEGVPGSAAPHIFLHTDPKTVSSWGMLSWWFQMSDNPVPYEGGSDGVSFWDNLKKDPEQKKLFFDAMAGDSELVASVLASEDYRKEVFQGVRTV VDVGGATGVFAVAMAKAFPDVKFILFDRPHIVENLKDGEVENLVVVGGDIFQDPIPPADAVLLKWTLHDWDDEKCVKILKSCREAVSTTAMTERKKRKVI IIDMVVDNDEPSQIQLCFDLLMMATFNGKERTKDEWKILFDSAGFSGYKIVRSLGPRSIIEAYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10033653 [exp]	0	1
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	8.1	0.7321
					Lus10003448 [exp]	10.1	0.7465
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	10.8	0.7414
					Lus10038430 [exp]	12.4	0.7518
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	13.2	0.7493
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	20.1	0.6978
AT2G32450			Calcium-binding tetratricopept...		Lus10038571 [exp]	20.4	0.6624
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	20.7	0.7051
AT3G08950		HCC1	homologue of the copper chaper...		Lus10002848 [exp]	22.0	0.6773
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	30.5	0.6643

Compare expression of checked genes

Lus10033653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.