Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54680 54 / 1e-08 proteophosphoglycan-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017694 [exp] 263 / 5e-89 AT3G54680 78 / 1e-17 proteophosphoglycan-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120700 [exp] 74 / 9e-16 AT3G54680 102 / 1e-26 proteophosphoglycan-related (.1) Potri.013G072200 [exp] 74 / 1e-15 AT3G54680 96 / 3e-24 proteophosphoglycan-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033654 pacid=23143502 polypeptide=Lus10033654 locus=Lus10033654.g ID=Lus10033654.BGIv1.0 annot-version=v1.0 ATGGCAAAAACCAACAAGTACGCCTCGATCAACTTCAACAATGTCTACGAGAAGAATCTGATCAGCGGCGGCAGCAACGCCAACGGTGTTAAACATAGCG ACGGGGTCCATTCTACGGGATATCTTCACAAGAATCACCACCACACTTCTTCTTCGACGACGACGGCAAGATCCAATGGCCGTATGCTCGTTCTGACCCG ACCCACTTCCAAACCCGTCTCATCTACCTCCCCCCCTCTCGTTTTCCCGTTGAAGCCGGCTCAAGATTCGACTCGGGTCAATTCGGACTCGGATCCGATT TCCCTCCGCCCGCTTGGAAAAACCGGAGGCGGCAGCGGCGGTGGCTCTTTTGTCAATCCTCCGATCATCGTGACTTCAACATCGCCCAAGCCGGAGAAGT TTGTTCCGCCGCATCTTAGGCCGGGTTTCGTCGCAAGGCAGGAGAATTTGAAGGAATCGGATCAGAATCAGAGTCCGAGGCAGTATTCGAATCAGCATCT CGGATCGTCTCCGCCGGGTCGGTTTGGAAACGATGGCAGACCGATTTCCGGTGGTGGGGCGAGGAGAGTTGGTGGCGGGGATGCGGATTCGGGTTTGTTG AACCGACCCAGATCCGGTGGGAGCCGTCCTAGCTCAAGTGGATGTTACGACTTTGCAACAGCTGATTCTGCTCGCCAAGTTAGTATCCCTTCTGTAAGCT ACTTACGTAGAGGATTCCACATTGATATCCCTGATGCTTTTGGATACTGTTAA
AA sequence Show only first row Show all	>Lus10033654 pacid=23143502 polypeptide=Lus10033654 locus=Lus10033654.g ID=Lus10033654.BGIv1.0 annot-version=v1.0 MAKTNKYASINFNNVYEKNLISGGSNANGVKHSDGVHSTGYLHKNHHHTSSSTTTARSNGRMLVLTRPTSKPVSSTSPPLVFPLKPAQDSTRVNSDSDPI SLRPLGKTGGGSGGGSFVNPPIIVTSTSPKPEKFVPPHLRPGFVARQENLKESDQNQSPRQYSNQHLGSSPPGRFGNDGRPISGGGARRVGGGDADSGLL NRPRSGGSRPSSSGCYDFATADSARQVSIPSVSYLRRGFHIDIPDAFGYC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	0	1
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	6.5	0.7668
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10026667 [exp]	11.8	0.7373
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	13.0	0.7321
AT4G18400			unknown protein		Lus10023291 [exp]	14.4	0.6952
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	14.6	0.7598
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	15.7	0.7356
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	17.7	0.7466
AT3G57990			unknown protein		Lus10012013 [exp]	18.5	0.7255
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10014986 [exp]	19.5	0.7239
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	19.5	0.7439

Compare expression of checked genes

Lus10033654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.