Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 156 / 3e-44 O-methyltransferase family protein (.1) AT4G35150 132 / 2e-35 O-methyltransferase family protein (.1) AT1G51990 119 / 1e-30 O-methyltransferase family protein (.1.2) AT5G54160 117 / 1e-29 ATOMT1 O-methyltransferase 1 (.1) AT3G53140 100 / 2e-23 O-methyltransferase family protein (.1) AT1G21130 90 / 9e-20 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G33030 89 / 1e-19 O-methyltransferase family protein (.1) AT1G76790 87 / 5e-19 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1) AT1G63140 87 / 7e-19 O-methyltransferase family protein (.1.2) AT1G62900 83 / 2e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033653 [exp] 556 / 0 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10033656 [exp] 274 / 1e-89 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10008538 [exp] 269 / 2e-87 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10018628 [exp] 265 / 3e-86 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10039744 [exp] 264 / 6e-86 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10018629 [exp] 263 / 2e-85 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017699 [exp] 263 / 2e-85 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10017691 [exp] 254 / 9e-82 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10018526 [exp] 253 / 1e-81 AT4G35160 176 / 1e-51 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121300 [exp] 291 / 1e-96 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 286 / 8e-95 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 282 / 5e-93 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 281 / 7e-93 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 281 / 9e-93 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 271 / 7e-89 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 266 / 1e-86 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 263 / 9e-86 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 256 / 7e-83 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 255 / 2e-82 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10033655 pacid=23143512 polypeptide=Lus10033655 locus=Lus10033655.g ID=Lus10033655.BGIv1.0 annot-version=v1.0 ATGGGAGGCAATTTACTCGAGAGCATGACCGCCGACGAGCTTCTTAAAGCTCAGGCAGAAGTCTGGAACTACGCCTTTAACTACATTGTCACAATGTGTC TTAAATGCGCCGTTGAGCTTCGAGTCCCCGACGCCATCCACCGCCATGGGGCTCCGATGACCCTCTCCGACCTCATCTCCGACCTCCCACTCCACCCTAT GAAAACCGACGCCCTCCGCCGCCTCTTGCGCCTCCTCGTCCAGGCCGGTTTCTTTACCGCAGTCAAACAAGAATCAGGAGAAAAACGTTACGGTCTCACC CACATCACGAGGCTCCTCGTCGACGGCATACCGGAGGCGGCCACGCCGTTCATCTTCCTGCACACGGATCCCAAGGCGATGTCGTCATGGGGGATGCTGA GCGCGTGGTTCCAGATGAGCGACGACCCGGTCCCATACAAGGCCGGCAACGACGGCGTGTCATTTTGGGAGAACCTGGAGAAGGAACCTGAGCAGAAGAA GGTGTTCTTCGATGCCATGGCCGGAGATTCGGAGTTGGTCGCGAGTGTCCTGGCATCGGAGGATTACGGTGAGGAAGTGTTCGAAGGCGTCGAGACATTT GTTGACGTTGGCGGCGCCACAGGAGAGTTAGCCGTCGGGATAGCGAAGGCGTTCCCCGATGTGAAGTGCATTCTATTTGATGTTCCTCACGTCGTTAAGA ATTTGAAGGAAGAAGTCAAGAATTTGGTGGTTGTTGGTGGAGATATGTTCCAGGATCCAATTCCTCCCGCTGATGCCGTCCTTCTCAAGTGTATTCTGCA CGATTGGGACGACGAAAGTTGCGTGAAGATCCTGAAGAATTGCAAAGAAGCAGTGACGTCATCGACGAACGAAAAGAAAGGGAAGGTGATCATCATCGAG ATGGTTGTGGATGATGAAGAACTGTCTCGAGTTCAACTGTGTTTCGATCTACTAATGATGGCTACTTTCAATGGCAAAGAACGAACCGAAGATGAATGGA AGATCCTTTTCGATTCGGCTGGGTTCAGTGGCTACAAGATCGTTCGCTCTTTAGGGCCTAGGTCTATCATTGAAGCTTATCCTTGA
AA sequence Show only first row Show all	>Lus10033655 pacid=23143512 polypeptide=Lus10033655 locus=Lus10033655.g ID=Lus10033655.BGIv1.0 annot-version=v1.0 MGGNLLESMTADELLKAQAEVWNYAFNYIVTMCLKCAVELRVPDAIHRHGAPMTLSDLISDLPLHPMKTDALRRLLRLLVQAGFFTAVKQESGEKRYGLT HITRLLVDGIPEAATPFIFLHTDPKAMSSWGMLSAWFQMSDDPVPYKAGNDGVSFWENLEKEPEQKKVFFDAMAGDSELVASVLASEDYGEEVFEGVETF VDVGGATGELAVGIAKAFPDVKCILFDVPHVVKNLKEEVKNLVVVGGDMFQDPIPPADAVLLKCILHDWDDESCVKILKNCKEAVTSSTNEKKGKVIIIE MVVDDEELSRVQLCFDLLMMATFNGKERTEDEWKILFDSAGFSGYKIVRSLGPRSIIEAYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	0	1
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	7.5	0.9822
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	11.7	0.9860
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	12.1	0.9692
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	12.6	0.9641
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	16.9	0.9856
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	20.4	0.9848
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	23.2	0.9846
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	24.3	0.9840
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	29.8	0.9824
AT1G29010			unknown protein		Lus10013688 [exp]	32.2	0.9527

Compare expression of checked genes

Lus10033655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.