Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 211 / 8e-65 O-methyltransferase family protein (.1) AT4G35150 187 / 2e-56 O-methyltransferase family protein (.1) AT5G54160 176 / 7e-52 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 152 / 8e-43 O-methyltransferase family protein (.1.2) AT1G77520 152 / 1e-42 O-methyltransferase family protein (.1) AT1G63140 143 / 4e-39 O-methyltransferase family protein (.1.2) AT5G53810 133 / 1e-35 O-methyltransferase family protein (.1) AT1G77530 131 / 9e-35 O-methyltransferase family protein (.1) AT3G53140 129 / 4e-34 O-methyltransferase family protein (.1) AT1G33030 110 / 3e-27 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017699 [exp] 677 / 0 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018629 [exp] 386 / 8e-134 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 371 / 1e-127 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 350 / 3e-119 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10013945 [exp] 341 / 5e-116 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 334 / 2e-113 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10017691 [exp] 323 / 7e-109 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10006691 [exp] 303 / 7e-101 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10038331 [exp] 308 / 2e-100 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 553 / 0 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 516 / 0 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 435 / 4e-153 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 432 / 5e-152 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 432 / 1e-151 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 423 / 2e-148 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 422 / 5e-148 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 393 / 2e-136 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 391 / 1e-135 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 389 / 1e-134 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10033656 pacid=23143306 polypeptide=Lus10033656 locus=Lus10033656.g ID=Lus10033656.BGIv1.0 annot-version=v1.0 ATGCTGAACTTGGGAGATGGGAAACACGATGCTGAGCTCCTCAAAGCTCAAGCACACATATGGAACCACATTTTCAACTTCATCAACTCCACCTCCTTGA AATCGGCCATCCAGCTAGGCATCCCGGACACCATCCACCGCCACGGCAAGCCCATGACCCTCTACGAACTATCTACTGCCTTGTCCATCAACCCTGCCAA GACCCGCTCCTTATCCCGCCTCATGCGCCTCCTCGTTCATTCCAAATTTTTCGCCCTTGAAAAAGTCAACAACACAGAACCTGTCCACCAACAGAAGAAT CAAGAAGAAGAGAAAGGATATGTCTTGACAAGCACTTCCCAGCTGCTTCTTACGGATAACCCGCTCAGCGTGACGCCCTTCCTCATGGCCATGCTGGACC CCATCCTCCTTAAGCCTTGGCACCACGTCAGCGAGTGGTTCGGTAACGATGATACGACGCCGTTTGACACGGCCCACGGAATGACGTTCTGGGAGTTCGC CGGGGATCAGCCGCAGCTGAATGGATTCTTCAACAACGCTATGGCCAGTGATGCCAGGCTGGTGACCACGGTGTTGGTCAACGAGTGCAGGAGCGCTTTC GAAGGGTTGGGGTCGTTGGTTGACGTCGGCGGTGGTACGGGGACGGTGGCAAAGGCTATCGCCGGTGCTTTCCCGGAGGTGGATTGCACGGTGCTTGATT TGCCGCACGTTGTTGATGGGCTGGAGAACAGCGGGAATTTGAAATTCGTCGGCGGTGATATGTTCGTGGAGATTCCGGCTGCTGACGCCGTCCTATTGAA GTGGATACTACACGATTGGAACGACGAAGAATGTGTGAAGATCCTGAAGAAGAGCAAAGAAGCAATCCAAGGGAGGGAAGGAGGAAAAGTGATGATAATC GACATGAAAGTCGACAACCAGAAGGCGAACGACGAGTCCATCGAAACCCAGCTCTTCTTCGACATGCTGATGATGATACTGGTGACGGGTCAGGAGAGAG ACGAGAAGGAATGGGCTAAACTGTTCGTCGATGCTGGCTTCCGCGATTATAAAATCACTCCTATCTTGGGCTTAAGATCCATCATCGAAGTTTATCCTTG A
AA sequence Show only first row Show all	>Lus10033656 pacid=23143306 polypeptide=Lus10033656 locus=Lus10033656.g ID=Lus10033656.BGIv1.0 annot-version=v1.0 MLNLGDGKHDAELLKAQAHIWNHIFNFINSTSLKSAIQLGIPDTIHRHGKPMTLYELSTALSINPAKTRSLSRLMRLLVHSKFFALEKVNNTEPVHQQKN QEEEKGYVLTSTSQLLLTDNPLSVTPFLMAMLDPILLKPWHHVSEWFGNDDTTPFDTAHGMTFWEFAGDQPQLNGFFNNAMASDARLVTTVLVNECRSAF EGLGSLVDVGGGTGTVAKAIAGAFPEVDCTVLDLPHVVDGLENSGNLKFVGGDMFVEIPAADAVLLKWILHDWNDEECVKILKKSKEAIQGREGGKVMII DMKVDNQKANDESIETQLFFDMLMMILVTGQERDEKEWAKLFVDAGFRDYKITPILGLRSIIEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	0	1
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	1.0	0.9846
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	1.4	0.9745
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	3.0	0.9741
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	3.5	0.9530
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	4.0	0.9548
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	4.0	0.9652
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	4.8	0.9486
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	5.9	0.9600
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	7.5	0.9524
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	10.0	0.9469

Compare expression of checked genes

Lus10033656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.