Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 340 / 8e-113 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 334 / 5e-111 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017700 [exp] 862 / 0 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2) Lus10005274 [exp] 295 / 9e-94 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10013950 [exp] 248 / 4e-80 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G092800 [exp] 429 / 3e-148 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 402 / 7e-138 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2) Potri.004G050900 [exp] 358 / 5e-120 AT1G28520 689 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.011G060000 [exp] 341 / 4e-113 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033657 pacid=23143385 polypeptide=Lus10033657 locus=Lus10033657.g ID=Lus10033657.BGIv1.0 annot-version=v1.0 ATGCAGAACGGCCAGAAGAGCAAGTCTCACCATCACATCAAGGACATTGCAAAGAACTGGGTTAATGATCATGAAGGAAGGCTATCTGACCTTCGAGCTG CTGTAAGGGAAGGCCGTCAGAGAGATTTTGAGGTTTTGGCGGAGCAAGTCTTTCAAAGCATCGGCGAATTGAGAACTGAACTAGATGCTCCTACCCCTGC CTCCTCTTCGCTTGTCGAAGATGATGCTACCAGTGCACCGACACAGTTCCCAGTTATGGAGCCTCCACATGGTACACAGCAAATCAATGAAAGCCATTCT CTTGGTGATTTCACAGCATATCATGATGGTTTCTTGGAAAGCGCTGGCACTCAGAATCATGATTTTCATGGACTCGATCAAACCGCCGGAGGCTTTCTTG ATGCATTTGATAGTATAGAGACTAAACCCTCGGATTTAAGTGCCTACTTTGACAGTGATCAATATATTGACTTTGACTATGGGCTGCCCGTCGACATTAA TCCTAATGAAGGTTTTATGAAGGAAACCGAATCGAGCAAGCCATCTTACGTCAGTCCTCCTCTTTCAGCCTTCATGGGTCCGAAATGTGCACTCTGGGAT TGCACCAGACCAGCTCAAGGATCCGAGTCATCCATGGAGTACTGCTGCAGCTTACACCGTGATGCAGCTGTTAGTGATGGCGGCCCAGGAAGGCCACCGA CTGTGCGACCTAAGGGGATTCGTATGAAAGACAATTTTCTATTTGATGCTCTTACTGCAAAGATACAGGGGAAGGAGGTTGGCATTCCTCAGTGTGTAGG AGCTGCTAGTACAAGGTCGCCATGGAACGCCCCTGATCTGTTCGATATTTCCTTATTCGAGGAGGAAACTTTACGGGAATGGGTATTTTTCGACGAGCCA AGAAAGGCCTATGACTCTGGAAGTAGGAAGCAGAGATCGCTGCCAGACTACAAGGGACGTGGGTGGCATGAATCGAGGAAGCAGGTGATCAGTCCGGGGT GCCAGAAGAGATCTTACTACATGGACCCACAACCTAGTAGCAGCCACGAGTGGCATCTGTACGAGTACCAGGTCCTAAACAGCGATGCTTCATGTGCATT GTACAAACTGGAGTACAAGCTTGCCGAGGCAAAGAAGACCCCTAGAGGGAAAGTCTCGAAAGCCTCTCTTGCCGACCTGCAGATGAAAATGAACAGGCTA AATGCTGACGGAACCCCTGATAGCAGCCCCAGCAACGGCAGCGCGAAATCGAATGTGAAAGCTGAATCTTCACCATCCGGTACTGTTCCGTGA
AA sequence Show only first row Show all	>Lus10033657 pacid=23143385 polypeptide=Lus10033657 locus=Lus10033657.g ID=Lus10033657.BGIv1.0 annot-version=v1.0 MQNGQKSKSHHHIKDIAKNWVNDHEGRLSDLRAAVREGRQRDFEVLAEQVFQSIGELRTELDAPTPASSSLVEDDATSAPTQFPVMEPPHGTQQINESHS LGDFTAYHDGFLESAGTQNHDFHGLDQTAGGFLDAFDSIETKPSDLSAYFDSDQYIDFDYGLPVDINPNEGFMKETESSKPSYVSPPLSAFMGPKCALWD CTRPAQGSESSMEYCCSLHRDAAVSDGGPGRPPTVRPKGIRMKDNFLFDALTAKIQGKEVGIPQCVGAASTRSPWNAPDLFDISLFEEETLREWVFFDEP RKAYDSGSRKQRSLPDYKGRGWHESRKQVISPGCQKRSYYMDPQPSSSHEWHLYEYQVLNSDASCALYKLEYKLAEAKKTPRGKVSKASLADLQMKMNRL NADGTPDSSPSNGSAKSNVKAESSPSGTVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	0	1
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	4.4	0.8352
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	6.2	0.7704
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	9.5	0.7326
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	19.1	0.7565
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	20.2	0.7572
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	23.4	0.7595
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	23.8	0.7900
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	25.0	0.7342
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	25.5	0.6940
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	32.3	0.7370

Compare expression of checked genes

Lus10033657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.