Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24420 54 / 5e-09 HXXXD-type acyl-transferase family protein (.1) AT3G26040 52 / 3e-08 HXXXD-type acyl-transferase family protein (.1) AT4G15400 42 / 5e-05 HXXXD-type acyl-transferase family protein (.1) AT1G24430 40 / 0.0003 HXXXD-type acyl-transferase family protein (.1) AT4G15390 39 / 0.001 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002893 [exp] 137 / 4e-39 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 119 / 2e-32 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 114 / 2e-30 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 110 / 6e-29 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 107 / 6e-28 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 99 / 1e-24 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10029648 [exp] 84 / 1e-19 AT3G63095 87 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036077 [exp] 69 / 6e-14 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 68 / 7e-14 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 73 / 1e-15 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 68 / 6e-14 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 64 / 2e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 64 / 2e-12 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 64 / 2e-12 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 62 / 8e-12 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 61 / 2e-11 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 61 / 2e-11 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 52 / 2e-08 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 51 / 5e-08 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10033658 pacid=23143354 polypeptide=Lus10033658 locus=Lus10033658.g ID=Lus10033658.BGIv1.0 annot-version=v1.0 ATGGGTCGACGTTTGTCCAAGGACTTGGCCGGGAACCTGACATCCACCCCGATCATCTCTTGTAAAGATACCACATCGCCGTCATTGAAGGACTTGGCGG CGATGCTACGGAAAGCAGTCGAAAGCATCAGCGAGAACTACCTTGATGCCATGTCGAAGGATCCGAATCAATGGTATGCTGGCGCTAGTAGTGATGAAGA GCCTCTGATTTGTTCGAGCTGGGTTGGGTTTGGTTTCAATGACTTCGAGTTCGGGTTAGGAAAGCCCGTTTCGACCGGGTTTTTTGGAGGTTCCGGTGAA GGTGGTTATGTTGGTTCCTCTTTTATTCTCAAGGAAATAGGTTTTGATGGGATTGAGGCATGGATAACCATGGATGAGGATGCCATGACTGTTTTTGAAG CAAACCCCAATTTTTCGGAGTTTGCTTCTAATAACCCTTTCATCGTCTTCAACAACAGCGAAATCAAGATGGTCTGA
AA sequence Show only first row Show all	>Lus10033658 pacid=23143354 polypeptide=Lus10033658 locus=Lus10033658.g ID=Lus10033658.BGIv1.0 annot-version=v1.0 MGRRLSKDLAGNLTSTPIISCKDTTSPSLKDLAAMLRKAVESISENYLDAMSKDPNQWYAGASSDEEPLICSSWVGFGFNDFEFGLGKPVSTGFFGGSGE GGYVGSSFILKEIGFDGIEAWITMDEDAMTVFEANPNFSEFASNNPFIVFNNSEIKMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	0	1
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	5.7	0.8638
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	8.3	0.8263
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	10.8	0.8288
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	15.0	0.8133
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	18.7	0.8195
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	21.5	0.8122
AT1G62935			unknown protein		Lus10009297 [exp]	21.5	0.8047
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017701 [exp]	25.8	0.8042
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	27.1	0.7108
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	27.7	0.8108

Compare expression of checked genes

Lus10033658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.