Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36160 482 / 1e-169 Tyrosine transaminase family protein (.1) AT2G20610 478 / 4e-167 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G53970 473 / 4e-166 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G28420 457 / 3e-159 Tyrosine transaminase family protein (.1.2) AT4G28410 418 / 4e-144 Tyrosine transaminase family protein (.1) AT2G24850 398 / 4e-136 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 379 / 4e-129 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 365 / 2e-123 Tyrosine transaminase family protein (.1) AT1G77670 113 / 2e-27 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 105 / 2e-24 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017703 [exp] 838 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 545 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10018626 [exp] 538 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 529 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 528 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 524 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 499 / 2e-176 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 481 / 2e-164 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10032654 [exp] 461 / 8e-162 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 581 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 570 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 568 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 566 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 556 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 534 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 520 / 0 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 252 / 7e-83 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G086000 [exp] 119 / 3e-29 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 117 / 2e-28 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10033659 pacid=23143547 polypeptide=Lus10033659 locus=Lus10033659.g ID=Lus10033659.BGIv1.0 annot-version=v1.0 ATGGAAAACGGGACCAAGAGTAACGGACGGCATTTCCATAACGGAGCCGCCAAACCCAACGGAGCTCATGCGGCACCGAACGGCAACGGGAAACCGACGC CGACCATCCGGGAAGTGAGGTTCGCTTTGATGGACAATCTGAACAAGGAAGACCAAAGGCCGCTGATCGAGCTGGCCCACGGCGACCCGTCTAGGTTCGA ATGCTTCCGTACGGACTCGGCGGCGGAGGACGCCATTGTCGACGCCGTCAGGTCCGGCAAGTACAACTCCTATGCTCCGTCTGCTGGCATTGTTCCGGCT AGAAGAGCAATAGCAGAGTACCTCAGCAATGACCTCCCGTACACCCTGACGCCAGAGGACGTCTTCATTACCTTAGGCTGCTCCCACGCAATCGAAGTCG CCTTAACAGCCCTGACCCGACCCGGAATATCCAACATCCTCCTTCCCCGACCCGGATACCCATACTACGAAGCCTGCTCCGGCCACCGGAACCTGGAGAC CCGCCACTACGACCTCCAGCCAGAAAACGGCTGGGAAGTCGATCTCGAATCCGTCGAGTCCTTAGCCGACCACAACACCGTCGCCATCGTCATCGTCAAC CCCGGAAACCCTTGCGGCAACGTCTACAGCAGCGCCCATTTGGAGAAGATCGCCGAGACTGCTAAGAAGCTCGGGATTCCGGTGATCGCCGACGAGGTGT ACGGACACCTGGCGTTTGGGGAAACCCCGTTTGTGGCGATGGGGAGTTTCGGGTCGGTCGCGCCCGTTATTACTCTCGGGTCTATTTCGAAGAGGTGGAT TGTTCCTGGGTGGAGGCTTGGTTGGCTCGTCGTCAGTGATCCCAACGATGTTCTGAGAAACTCGGGGCTGGTTAGTAAGATCCAAGCTAGTCTGTTTACC TCCCCTGATCCTCCGACCTTCATCCAGGCTGCAGTGCCACAGATTCTGGAGAACACAAAGGAGAGCTTCTTTACAAAGATCAATGGGTTGTTGAAGGAGG CTGTAGACCTCTGCTACGAAAGGCTTCACGAAATTCCTTGCATTACGTGCCCTACGAAACCCGAAGGCGCAATGTTTGCTATGGTGAAACTGGAGCACTC AGAAATGGAAGGGATTAAGGATGACATGGACTTCTGTCTCAAACTAGCCAAAGAGGAGTCTGTCATTGTCTTGCCAGGGACGACTGTGGGGCAGAGGAAT TGGCTTCGTATAACATTTGCGATCGAGCCTGCAACGCTGGAGGCCGGGCTAGGGAGAATAAAGGCCTTCTGTGAAAGGCATGCCATGAAGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10033659 pacid=23143547 polypeptide=Lus10033659 locus=Lus10033659.g ID=Lus10033659.BGIv1.0 annot-version=v1.0 MENGTKSNGRHFHNGAAKPNGAHAAPNGNGKPTPTIREVRFALMDNLNKEDQRPLIELAHGDPSRFECFRTDSAAEDAIVDAVRSGKYNSYAPSAGIVPA RRAIAEYLSNDLPYTLTPEDVFITLGCSHAIEVALTALTRPGISNILLPRPGYPYYEACSGHRNLETRHYDLQPENGWEVDLESVESLADHNTVAIVIVN PGNPCGNVYSSAHLEKIAETAKKLGIPVIADEVYGHLAFGETPFVAMGSFGSVAPVITLGSISKRWIVPGWRLGWLVVSDPNDVLRNSGLVSKIQASLFT SPDPPTFIQAAVPQILENTKESFFTKINGLLKEAVDLCYERLHEIPCITCPTKPEGAMFAMVKLEHSEMEGIKDDMDFCLKLAKEESVIVLPGTTVGQRN WLRITFAIEPATLEAGLGRIKAFCERHAMKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	0	1
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	3.7	0.9680
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	3.9	0.9756
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	4.4	0.9509
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	4.9	0.9581
					Lus10040444 [exp]	6.2	0.9635
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	15.7	0.9583
					Lus10002555 [exp]	18.3	0.9581
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	18.4	0.9179
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	19.1	0.9273
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	22.2	0.9394

Compare expression of checked genes

Lus10033659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.