Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 407 / 5e-142 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 380 / 2e-131 Tyrosine transaminase family protein (.1) AT2G20610 371 / 4e-127 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 369 / 2e-126 Tyrosine transaminase family protein (.1.2) AT4G28410 331 / 1e-111 Tyrosine transaminase family protein (.1) AT2G24850 324 / 5e-109 TAT3 tyrosine aminotransferase 3 (.1) AT4G23590 302 / 2e-100 Tyrosine transaminase family protein (.1) AT4G23600 300 / 5e-100 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G77670 94 / 3e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G11280 67 / 3e-12 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017704 [exp] 588 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017705 [exp] 583 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 570 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10039861 [exp] 476 / 9e-169 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10018626 [exp] 465 / 2e-164 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017703 [exp] 409 / 2e-142 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 405 / 8e-141 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017934 [exp] 402 / 4e-140 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 392 / 6e-132 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 456 / 4e-161 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 444 / 3e-156 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 439 / 1e-154 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 437 / 1e-153 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 434 / 2e-152 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 406 / 1e-141 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 400 / 3e-139 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 194 / 1e-61 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G086000 [exp] 93 / 8e-21 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 92 / 1e-20 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10033660 pacid=23143506 polypeptide=Lus10033660 locus=Lus10033660.g ID=Lus10033660.BGIv1.0 annot-version=v1.0 ATGGTGGATTCCTTGAGATCTGCTAAGTTCAATGGCTACTCTCCCCCTGCTAGTGTTCCTGCTGCTAGGAGCCGCGACCTCCCATACAAGTTATTGGAGG ATGATGTTTATCTAGCAGTTGGATGCATCCAAGCAATCGAACTGACATTGGCAGTCCTAGCATGCCCCGGTGCAAACATCTTGCTCCCAAGGCCAGGTTT CCCACACTACGAATCACGCTGTGCAGTGTTTAACCTCGAAGCTCGTCACTTTGACCTTTTGCCGGAAAAGGGTTGGGAAATGGACCTCCAAGGAGTCGAA GCTCTTGCGGATGAGAATACTGTCACCCTGGTCGTTATCAACCCTGGGAATCCTTGTGGATCTGTCTACAGCTATGAGCAGTTGAAGCGTGTTGCGGAGA CAGCCAAGAAGCTCGGGATACTGATGATTGCTGATGAAGTATACGCCCATCTCACCTTCGGTAGCAACGAGTTTGTGCCAATGGGGGTCTTCAGATCAAT TGTGCCTGTCTTGACGCTTGGATCCATCTCAAAGAGATGGATCGTGCCAGGCTGGCGGCTTGGCTGGGTCGTCACAACTGATCCCAATGGCATCCTCACC AAAACCGGGGTGGTCGAGTCGATCAAGGCCTCCTTCGACATGACCTCGGATCCAGCAACATTCATTCAGGGTGGAGTGAAGCAACTACTTGAAAACACAA AGGAGGATTTCTTCTTGAGAATCAAAGGCTTGTTGAAGGAATGTGCAGACTTGTGCTACGAAAGGATTCGGAAGATTCCTTATGACATCGAGGACGACGT GGATTTCTGTAACAAGCTTGCTAGAGAGGAATCAGTGATAGCTCTGCCAGGATTAGTTGTCGGTCTGAAGAACTGGCTGCGTATTACCTTTGCAACCGAT CAAACTTCTCTTGAAGAAGGGCTCGATAGGATGAACGTGTTCTGCGAAAGGCACGCGAAGAAGCCTTAG
AA sequence Show only first row Show all	>Lus10033660 pacid=23143506 polypeptide=Lus10033660 locus=Lus10033660.g ID=Lus10033660.BGIv1.0 annot-version=v1.0 MVDSLRSAKFNGYSPPASVPAARSRDLPYKLLEDDVYLAVGCIQAIELTLAVLACPGANILLPRPGFPHYESRCAVFNLEARHFDLLPEKGWEMDLQGVE ALADENTVTLVVINPGNPCGSVYSYEQLKRVAETAKKLGILMIADEVYAHLTFGSNEFVPMGVFRSIVPVLTLGSISKRWIVPGWRLGWVVTTDPNGILT KTGVVESIKASFDMTSDPATFIQGGVKQLLENTKEDFFLRIKGLLKECADLCYERIRKIPYDIEDDVDFCNKLAREESVIALPGLVVGLKNWLRITFATD QTSLEEGLDRMNVFCERHAKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	0	1
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	3.2	0.8288
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10041822 [exp]	4.5	0.8178
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	5.7	0.8422
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10028372 [exp]	5.7	0.8224
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	6.9	0.8155
					Lus10013093 [exp]	8.8	0.7912
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	12.3	0.8028
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	13.6	0.8158
					Lus10036648 [exp]	15.3	0.7515
					Lus10025936 [exp]	16.6	0.7680

Compare expression of checked genes

Lus10033660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.