Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36160 500 / 1e-176 Tyrosine transaminase family protein (.1) AT5G53970 493 / 5e-174 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G20610 488 / 2e-171 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28420 469 / 3e-164 Tyrosine transaminase family protein (.1.2) AT4G28410 448 / 5e-156 Tyrosine transaminase family protein (.1) AT2G24850 399 / 7e-137 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 363 / 5e-123 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 361 / 5e-122 Tyrosine transaminase family protein (.1) AT1G77670 105 / 2e-24 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 86 / 7e-18 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017704 [exp] 785 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017705 [exp] 783 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018626 [exp] 639 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 637 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033660 [exp] 571 / 0 AT5G53970 408 / 3e-142 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017703 [exp] 531 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 528 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017934 [exp] 503 / 3e-178 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 485 / 3e-166 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 602 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 585 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 580 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 578 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 573 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 523 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 503 / 5e-178 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 239 / 1e-77 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 113 / 2e-27 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 113 / 3e-27 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10033661 pacid=23143298 polypeptide=Lus10033661 locus=Lus10033661.g ID=Lus10033661.BGIv1.0 annot-version=v1.0 ATGGGGGAGGAGGGTAGTATCGGCATGGACGAGAACTGGAAGTTCAAACCCAACGCGGAGGTCATCTCTGCTTCTAAATTCACACTCCGTGGATACCTCA CCAGTTTGATGTCTAAGGTCAACAAGGACGATAAAAGGTCAGTTGTACCCCTGAGCCATGGAGACCCATCTGCTTTCCCTTGCTTCAGACCAAACCCTGC TGCAGAAGATGCCATGGTGGATTCCCTGAGATCGGCTAAGTTCAATTGCTACTCTCCCCCTGCTGGTGTTCTTGCTGCTAGGAGGGCGATTGCGGAGCAC CTGAGCCGTGATCTCCCGTACAAGTTATCGGAGGACGATGTTTTCTTAGCCGTTGGATGCATCCAAGCAATTGAAAATACATTGGCAGTCCTTGCACGTC CTGGTGCAAACATCTTGCTCCCAAGGCCAGGCTTCTCACGCTATGAAGCGCGCGCTGCAGTGTCCAACCTTGAAGCTCGTCACTTCGATCTGTTGCCGGA AAAGGGTTGGGAAGTGGACCTCAAAGGAGTCGAAGCTCTAGCAGACGAGAACACTGTCGCCATGGTCGTTATCAACCCTGGGAATCCTTGTGGATCCGTC TACAGCTACGAGCACTTGAAGCGAGTTGCGGAGATGGCCAAGAAGCTCGGGATATTGGTGATTGCTGATGAAGTGTACGCCCATCTCACGTTCAGTAGCA ACGAGTTTGTGCCGATGGGTGTCTTCGGATCGATTGTGCCTGTCTTGACGCTTGGATCCATCTCGAAGAGATGGATCGTGCCAGGCTGGCGGCTTGGCTG GGTCGTCACGACTGATCCTGATGGCATCCTCACCAAAACCGGGATGGTCGAGTCGATCAAGGCCGGTTTCGACATCACCTCAGATCCAGCAACGTTCGTT CAGGGTGGAGTGAAGCAACTACTGGAAAACACAAAGGAGGATTTCTTCTTGAGAATCAAAGGCTTGTTGAAGGAATGTGCTGACTTGTGCTACGAAAGGA TTCAAAAGATTCCTTATGTCACCTGTCCAGTGAAACCAGAGGGTTCCATGTTTATAATGGTGAAGCTGAACTATGAAACACTCAAGGACATCGAGGACGA CGTGGATTTCTGTAACAAGCTTGCTAGAGAGGAATCTGTGATAGTCCTACCAGGAGTAGGTGTGGGTCTGAAGAACTGGCTGCGTATAACTTTCGCGATT GATCGAACTGCTCTTGAAGACGGGCTCGACAGGATGAATGCATTCTGCGAAAGGCACGCGAAGAAGCCTTACTGA
AA sequence Show only first row Show all	>Lus10033661 pacid=23143298 polypeptide=Lus10033661 locus=Lus10033661.g ID=Lus10033661.BGIv1.0 annot-version=v1.0 MGEEGSIGMDENWKFKPNAEVISASKFTLRGYLTSLMSKVNKDDKRSVVPLSHGDPSAFPCFRPNPAAEDAMVDSLRSAKFNCYSPPAGVLAARRAIAEH LSRDLPYKLSEDDVFLAVGCIQAIENTLAVLARPGANILLPRPGFSRYEARAAVSNLEARHFDLLPEKGWEVDLKGVEALADENTVAMVVINPGNPCGSV YSYEHLKRVAEMAKKLGILVIADEVYAHLTFSSNEFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWVVTTDPDGILTKTGMVESIKAGFDITSDPATFV QGGVKQLLENTKEDFFLRIKGLLKECADLCYERIQKIPYVTCPVKPEGSMFIMVKLNYETLKDIEDDVDFCNKLAREESVIVLPGVGVGLKNWLRITFAI DRTALEDGLDRMNAFCERHAKKPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	0	1
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	2.0	0.9270
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	6.1	0.9347
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	7.2	0.9026
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	10.1	0.9242
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	11.0	0.9130
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	12.2	0.9036
					Lus10040377 [exp]	12.4	0.9158
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	18.3	0.9119
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	19.1	0.9221
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	20.2	0.9240

Compare expression of checked genes

Lus10033661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.