Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55130 428 / 1e-140 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G39350 427 / 4e-140 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55100 424 / 9e-140 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55110 417 / 1e-136 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G37360 416 / 1e-135 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55090 415 / 2e-135 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G53510 402 / 1e-130 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT2G13610 287 / 1e-87 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT5G13580 274 / 5e-82 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT4G25750 263 / 4e-79 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017707 [exp] 1174 / 0 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 455 / 3e-151 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 446 / 1e-147 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 440 / 1e-143 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 437 / 9e-143 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 406 / 7e-132 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 284 / 3e-86 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 282 / 2e-85 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 283 / 6e-85 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047900 [exp] 449 / 3e-148 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 437 / 6e-144 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 439 / 1e-143 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 439 / 1e-143 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.002G156900 [exp] 422 / 5e-138 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 420 / 1e-137 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 419 / 6e-137 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 318 / 2e-98 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 311 / 6e-97 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 310 / 1e-96 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10033663 pacid=23143411 polypeptide=Lus10033663 locus=Lus10033663.g ID=Lus10033663.BGIv1.0 annot-version=v1.0 ATGGCAAGCCTCGAGAGCCTGCTGGACATGGACGAAACTATCCGAACGACAACGAATAACAACGAAGAAAGTGGGCTGGCGTTCAAGAACCTATTCTACA GTGTGAAGAAGAAACAGGCGTACCTACTCAATGATATCTCTGGACATGCTGTCAAGGGTGAGATCACGGCTATTATTGGGCCTAGTGGTGCTGGAAAATC AACTTTGCTTGATGCCCTGGCTGGCCGGATTGCTCGGGGGAGTCTCGAAGGGTCTGTTAAAATGGACGGCAAGGTGATGATATCTTCTTACGTGATGCAA GACCATAATCTCTTCCCCAAGCTGACTGTTTTCGAGACGTTCTTATTCGCTGCAGAGTTCAGACTTCCTCCGACCATTTCCAGAGCCGAGAAGATGGACA GAGCTCATGAACTCATCCACCAGCTAGGCCTCACGAATGTCACACATTCATACATTGGCGACAGAGCCGGGAAAGGAGTCTCGGGAGGAGAACGAAGAAG GGTTTCGATCGGAATCGACATCATCCATAACCCTCCGTTGCTGTTCCTCGACGAACCCACCTCCGGATTGGACTCTGCAAACGCTTACAGTGTGGTGAAA AAGATTAAAGACATTGCTCGAAGGGGGAGCATAGTGTTGATGACCATTCATCAACCTTCTTACAGAATCCAACTGCTCCTGGATCGCATTGCCATCCTCG CCAGGGGAAGGCTGATATACATGGATACCCCGGCTGCACTTCCAAAGCATCTATCTGAATTCGGCAGACCAATTCCAGATACTGAAAACAGCATCGATTA TCTCCTTGATGTCATCAAAGAATACGACGAATCCACTTCCGGATTGGATCCTCTAGTGATGTACCAAAGAGATGGAATCATACCTGATCCAATTTCCATC ACTCCTCACTCCATTCATCATGATCATGATGACCAATTCGACAATTCGGATCAACCTCGCTTAGCTTCCCATTTCTACAAGGATTTCCCTGTTTGGCTGT ACCACGGCTTCACCGGAACACCTCGTCGAACACCTTCCTGGACTCCTCCTGCAATCGAAGAAGAAGAAGAAGAACCACGAAACGAGCCTGCAGATCAGGT TTCGAAATTCGCAAACCCATGGATCCGAGAACTTAGCATAATAAGCTGGAGAACGGTGCTGAACATCATCCGTACACCGGAGCTCTTCCTATCCCGAGTA GTAATCCTCATCGTCATAGCCCTAATCCTTTCCTCCGTCTACAGAAACCTCGGCGATCCATCTTTCAAGACAGTGAACCACCTCCTCAACTTCTACATCT TCACCGTCAGCCTCGTCTTCTTCTCATCTAACGACGCCGTACCGATCTTCATCCAAGAGCGATCCATCTTCATCCGAGAAACCTCCCACAACGCCTACCG ATCCTCAACCTACGCCATCGCTTCTCTAATCGTCTACCTCCCGTTCTTCGCCGTCCAATCCTTCACATTCACATCCCTAACAAAATCCATCCTAAACCTA AACGGAAACCTCTTCAGCTTCACATCCATTCTCTTTGGCTCGTTAATCGCCTCCCATTCCTACGTCACGCTAGTCTCCGCCGTGGTCCCGAGCTACGTCG CTGGGTACGCCGTCGTCATCGCCACGACGGCGGTGTTCTTCCTCACCTGCGGGTTCTTCCTGAAAAGGAGTGAGATCCCCGCGTGGTGGCGGTGGCTGCA CTACGCGTCGGCGATCAAGTTCCCGTTCGAGGCGATGCTGAAAAACGAGTTCGGAGGCGGGAGGTGCTACTACGGGAGGTTTTCCGATCTGTCGGCGGGT CCTTTGGGGGAGGTGAAGGTTAGTGAAATGCACGCTGGGTTGATAGCGTATGGGACTGCGCCGGAAGGGAAGTGTCCGTTGATCGGGGAAGACGTGATAT CATCGATGGACGTCGGGGGTGGGGATTTGTGGTTCGACGTCGCCGTTTTGATGGGTTTGGGTTTGGTTTACCGGGTTTTTTTGTATTTGGTGCTCCGCTT TTACTCCAACAATGTTCGGAAATGA
AA sequence Show only first row Show all	>Lus10033663 pacid=23143411 polypeptide=Lus10033663 locus=Lus10033663.g ID=Lus10033663.BGIv1.0 annot-version=v1.0 MASLESLLDMDETIRTTTNNNEESGLAFKNLFYSVKKKQAYLLNDISGHAVKGEITAIIGPSGAGKSTLLDALAGRIARGSLEGSVKMDGKVMISSYVMQ DHNLFPKLTVFETFLFAAEFRLPPTISRAEKMDRAHELIHQLGLTNVTHSYIGDRAGKGVSGGERRRVSIGIDIIHNPPLLFLDEPTSGLDSANAYSVVK KIKDIARRGSIVLMTIHQPSYRIQLLLDRIAILARGRLIYMDTPAALPKHLSEFGRPIPDTENSIDYLLDVIKEYDESTSGLDPLVMYQRDGIIPDPISI TPHSIHHDHDDQFDNSDQPRLASHFYKDFPVWLYHGFTGTPRRTPSWTPPAIEEEEEEPRNEPADQVSKFANPWIRELSIISWRTVLNIIRTPELFLSRV VILIVIALILSSVYRNLGDPSFKTVNHLLNFYIFTVSLVFFSSNDAVPIFIQERSIFIRETSHNAYRSSTYAIASLIVYLPFFAVQSFTFTSLTKSILNL NGNLFSFTSILFGSLIASHSYVTLVSAVVPSYVAGYAVVIATTAVFFLTCGFFLKRSEIPAWWRWLHYASAIKFPFEAMLKNEFGGGRCYYGRFSDLSAG PLGEVKVSEMHAGLIAYGTAPEGKCPLIGEDVISSMDVGGGDLWFDVAVLMGLGLVYRVFLYLVLRFYSNNVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	0	1
					Lus10003693 [exp]	2.2	0.7704
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	3.0	0.6880
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	5.3	0.7513
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	10.2	0.7096
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	11.2	0.7015
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	18.0	0.6810
AT1G30130			unknown protein		Lus10028119 [exp]	24.5	0.6575
AT4G14370			Disease resistance protein (TI...		Lus10001352 [exp]	26.0	0.6607
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028369 [exp]	27.0	0.6799
					Lus10034718 [exp]	36.7	0.7039

Compare expression of checked genes

Lus10033663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.