Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03790 239 / 2e-76 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 222 / 5e-70 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G29190 205 / 9e-64 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 204 / 2e-63 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT2G25900 203 / 2e-63 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G41900 181 / 1e-51 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 180 / 2e-51 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 176 / 2e-50 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G07500 163 / 9e-49 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G55980 162 / 2e-45 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017708 [exp] 355 / 4e-123 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 226 / 5e-72 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10012922 [exp] 202 / 3e-62 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10035006 [exp] 202 / 4e-62 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10019709 [exp] 177 / 4e-50 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 168 / 2e-47 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 166 / 1e-46 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 157 / 4e-45 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138300 [exp] 237 / 7e-76 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.017G013400 [exp] 229 / 9e-73 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G234300 [exp] 213 / 2e-66 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 205 / 1e-63 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.001G266700 [exp] 179 / 6e-51 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 178 / 8e-51 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 177 / 2e-50 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 177 / 3e-50 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 174 / 3e-49 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 173 / 8e-49 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10033665 pacid=23143386 polypeptide=Lus10033665 locus=Lus10033665.g ID=Lus10033665.BGIv1.0 annot-version=v1.0 ATGACCACCGCCGCCGCCTCCATTTACTCCGATCACCACCCATCTTCCCCCACTGCCAAACTCCCTCCTAGAAAGCTCCTCGTCAACAGAAACAACACCG TTGACTTCCCTCAGCTGGACGACATGTCGTCTTTGGCGCATTTCTACAAACACCTTCCGTGCAACAAAGCAGACCAGCTCGAGGAAGAAGAAGAAGATGG CGATCCTTACTCGTCAGATCAATTCAGGATGTATGATTTCAAAGTCAGGAGGTGTACAAGGAGCCGTAGCCACGACTGGACTGACTGCCCCTTTGCCCAC CCGGGCGAGAAGGCCCGCCGCCGTGATCCGAGGAAGTTTCACTACACGGGCGCGGTTTGCCCTGAGTTCCGACGCGGCGGAGGGTGTAGCCGCGGCGATA ACTGCGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTGCATCCGTTGAGGTACAGAACTGAAGCTTGTAAAGATGGGAAGGGCTGTAAGAGGAAGGTCTG CTTCTTCGCTCACTCCCCCCGCCAGCTCCGCCTCCTTCCGCCGGAGAAGTCGTCGCCGACCCCCCCCCCCCCCCCCCTTCCGCGGGGGGGAGGTCCGCGC AGGAGAGGGGGGTGGGGTTTTGGTAAATGTCGCCCCCCGCCATCATTCCTGCGGATGCTTGGTCTGCCGTGGCAGCGGCGGCGATTCCTCATCTCCGACA TCTACTCTCATCGGGCTGTCCCATCTCTCGCCGCCGCTGTCCCCTTCTTTTTCCTCGTCACCGCCTGTGTCACCGGTGAGCCACCACCGTCCTTCAGCGG CGGGGGCGACCGGGTTTTCTCACCGACTGACGAGGAAGCCGCCGCCGCCGCTGAGGACCCCCCCCCCCGCCTCTGTTGCGGCGGCAGCTGCAGCGGTGTC GTCGTCTCCGACTTCAGGCCTCACCGTTAA
AA sequence Show only first row Show all	>Lus10033665 pacid=23143386 polypeptide=Lus10033665 locus=Lus10033665.g ID=Lus10033665.BGIv1.0 annot-version=v1.0 MTTAAASIYSDHHPSSPTAKLPPRKLLVNRNNTVDFPQLDDMSSLAHFYKHLPCNKADQLEEEEEDGDPYSSDQFRMYDFKVRRCTRSRSHDWTDCPFAH PGEKARRRDPRKFHYTGAVCPEFRRGGGCSRGDNCEFAHGVFECWLHPLRYRTEACKDGKGCKRKVCFFAHSPRQLRLLPPEKSSPTPPPPPLPRGGGPR RRGGWGFGKCRPPPSFLRMLGLPWQRRRFLISDIYSHRAVPSLAAAVPFFFLVTACVTGEPPPSFSGGGDRVFSPTDEEAAAAAEDPPPRLCCGGSCSGV VVSDFRPHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011287 [exp]	1.0	0.8011
AT3G27250			unknown protein		Lus10014610 [exp]	3.5	0.7981
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	5.3	0.7521
					Lus10032385 [exp]	7.5	0.7546
AT1G26920			unknown protein		Lus10012840 [exp]	14.1	0.6958
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	14.7	0.7064
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	17.7	0.6786
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	18.4	0.6372
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	23.1	0.6805
AT3G23880			F-box and associated interacti...		Lus10027780 [exp]	23.2	0.6873

Compare expression of checked genes

Lus10033665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.