Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17465 420 / 1e-148 RPL3P ribosomal protein L3 plastid (.1) AT2G43030 120 / 3e-32 Ribosomal protein L3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017709 [exp] 536 / 0 AT3G17465 450 / 2e-160 ribosomal protein L3 plastid (.1) Lus10001337 [exp] 120 / 7e-32 AT2G43030 365 / 2e-128 Ribosomal protein L3 family protein (.1) Lus10013640 [exp] 120 / 8e-32 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207000 [exp] 444 / 4e-158 AT3G17465 478 / 1e-171 ribosomal protein L3 plastid (.1) Potri.010G002300 [exp] 439 / 3e-156 AT3G17465 484 / 8e-174 ribosomal protein L3 plastid (.1) Potri.013G070100 [exp] 135 / 1e-37 AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF00297 [flax] [poplar] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Lus10033666 pacid=23143487 polypeptide=Lus10033666 locus=Lus10033666.g ID=Lus10033666.BGIv1.0 annot-version=v1.0 ATGTCCACCTTGGGTATCCGTCGTCTTCTATTTCTATCCACCAGAACATCCTCCTCCGCCGAAGCCCATCCGCCATTTCACCAATTTCTCCGAAGCTTCA CCGCCACCGCCGATGCCCTGCTTCATCCGCAGCAGAGCCCTCTGATTTCCAATCGGATCATCGAGCCCAAGACAGGCGTCATGGCTCCTTCCTCTAGGCG GACGGGACTTATCGCCGTCAAGTGTGGAATGACTGGCCTCTGGGACAAATGGGGAGCTAGGGTTCCTATCACCGTGCTTTGGGTCGACGACAACATCGTC TCCCAGGTCAAAACCGTTGAGAAGGAAGGCATTTTCGCCTTGCAGATTGGTTGCGGGCAGAAGAAGGCGAAGCATTTGACGAAGCCAGAAGTGGGGCATT TCAGAGCTCAGGGTGTTCCCCTGAAGAGGAAGTTGAGGGAATTCCCTGTCACTGAAGATGCATTACTGCCGCTTGGTACTTCGCTTGGTGTTCGTCATTT CGTTCCTGGTCAATTTATTGATGTCACTGGAATCACCATGGGCAAAGGGTTTCAGGGTGGGATGAAAAGACATAATTTTAAAGGAATGCCAGCGAGCCAT GGACATTCATTGTCTCACCGAAGTATCGGTTCCACTGGCCAGAGGGATGCTCCTGGTAAGGTTTTTAAAGGGAAGAAAATGCCTGGGCGGATGGGTGGCA AGCAACGAACGGTGAAGAACGTGTGGATATACAAGATCGACCCCGCGAGGAACTTGATATGGGTGAAAGGCCAAGTACCGGGAGCAGAAGGAAATTTCGT CTTTCTAAAAGACGCAGTTTACAAGAAACCGGAGATTTCGATGCTTCCTTTCCCAACGTACTTCCCGGAAGAAGGCGAGGAGGAACAGTCGGAACCTCTG GTTGCTGACCTTGGAGAAGTAGACCCGTTCATGTTGGGAGATTGA
AA sequence Show only first row Show all	>Lus10033666 pacid=23143487 polypeptide=Lus10033666 locus=Lus10033666.g ID=Lus10033666.BGIv1.0 annot-version=v1.0 MSTLGIRRLLFLSTRTSSSAEAHPPFHQFLRSFTATADALLHPQQSPLISNRIIEPKTGVMAPSSRRTGLIAVKCGMTGLWDKWGARVPITVLWVDDNIV SQVKTVEKEGIFALQIGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPLGTSLGVRHFVPGQFIDVTGITMGKGFQGGMKRHNFKGMPASH GHSLSHRSIGSTGQRDAPGKVFKGKKMPGRMGGKQRTVKNVWIYKIDPARNLIWVKGQVPGAEGNFVFLKDAVYKKPEISMLPFPTYFPEEGEEEQSEPL VADLGEVDPFMLGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	2.0	0.9578
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	4.2	0.9336
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	6.5	0.9293
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	6.9	0.9395
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	7.5	0.9442
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	8.8	0.9294
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	8.8	0.9305
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	11.2	0.9439
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	12.2	0.9344
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	12.8	0.9373

Compare expression of checked genes

Lus10033666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.