Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 145 / 1e-37 Plant protein of unknown function (DUF247) (.1) AT3G50130 100 / 2e-22 Plant protein of unknown function (DUF247) (.1) AT3G50170 92 / 1e-19 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 91 / 2e-19 Plant protein of unknown function (DUF247) (.1) AT3G50180 86 / 1e-17 Plant protein of unknown function (DUF247) (.1) AT4G31980 82 / 4e-16 unknown protein AT3G50120 69 / 3e-12 Plant protein of unknown function (DUF247) (.1) AT3G50140 68 / 8e-12 Plant protein of unknown function (DUF247) (.1) AT3G50160 65 / 4e-11 Plant protein of unknown function (DUF247) (.1) AT5G22540 59 / 3e-09 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009504 [exp] 147 / 1e-38 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 131 / 9e-33 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 127 / 2e-31 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 97 / 3e-21 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 95 / 2e-20 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 94 / 4e-20 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 78 / 4e-15 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 76 / 2e-14 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 73 / 2e-13 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337900 [exp] 154 / 6e-41 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 147 / 3e-38 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 144 / 2e-37 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.009G085300 [exp] 104 / 1e-23 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 98 / 2e-21 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 96 / 6e-21 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 95 / 7e-21 AT4G31980 232 / 3e-69 unknown protein Potri.014G054200 [exp] 87 / 5e-18 AT2G28580 239 / 7e-73 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 87 / 6e-18 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 84 / 3e-17 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10033668 pacid=23143312 polypeptide=Lus10033668 locus=Lus10033668.g ID=Lus10033668.BGIv1.0 annot-version=v1.0 ATGAACTCTCTTGATGCTACAAATGAAGAACAAAACCTAGTCCCAATCCCATTCTGCATCTTCAAAATCCCACCACAGCACATCTCCCCGGCCTCCAAGC CACACCATTTCTCCCCTCAGGTCATCTCCATGGGACCTTACCACCATTCGAGGCACGACCTTCTCCCCATGCAGCCATTCAAGCTGTCCCTAGCCACAAC CGGCGCGCTGATGATCACCAACAACTTCCGTCCTCCTCCTTCGACTCGTTCCATCCCTGACATCGTTCGAAAGCTCGAACCCCTCGCGCCAGAGATTCGT CAGTGCTATGACAAGGAGTTAAGCGTCGACGATGCTGCGTTGGCCGAGATCGTGGCTGTGGACGGGGCTTTCTTGGTGGAGGTGCTCTGCTTCAACGATG GCAACCTCCCCTGTTTTTCCAACAGGAGGGTCTTCCTTGGGAAGGAAGCTAGAAGGAGGATTGGGATCGGGTTCTTTAGAGATGTTATGATGGTCGAGAA CCAGATTCCGATTTTCGCCCTCCGGGAGATCGTGCCTAAGGGGTTCGATGGGAGATTATGTTCAGGTTTAGTGCGATTCTGCCAGAAACTATCTCCACTG GAGATGAACTCAACCTACCCTGTTCCAGAACTGGACGACGCAGAGCCACTCCATCTCTTAGATCTCCTCTACAATCTGATCCTCCTGAAATTCCCTGACG ATCCGGATACGAAATCCACCTCCACCGAAAGATTCCTCGAATCGATCTACCATCTTCAGCATCCATTAATCCTCATCCTCCTATACCCGGTCAAAAACCT GATCTTAATCATCCCCAGAATCTTATCCGCAATCCCAATCCTAAGAACTCTAATCGACCTCAACGTGCACAAAATCGAAGCCCCGACGATCTCCTCGGCG TCGGAATTGATAAGAGCAGGCGTCAGATTCCGTCCATCGGTTGGAGGAAGCGTCAGGTCAATCTCTTTCAAAGCCAGAACGTTGAATTTCCCGCGGTTCG TATGGCACCCTAGCTCGGAGGTCGTGTTCCGTAACCTGGTGGCGTACGAATCTATGGCTAAGAAGTCCGAAGGGGATCTGATTCTGGCTCAGTATGGGAA GCTGATGGACGGGCTGATCCGGACGAAGGACGACGTAGAAGTGTTGAGAGAGGCCGGAATCGTCGTCTGCAGTGAGGATGACGATGGAATTGGGGAGTTC GTCGGAGGTTTGTTCGGCGGGATTGGGGGATCGGTTGAGTTGAAAGATAAGGAGATTGTTGAGACGGTGAAGGATTTGAGGATCTTTCATGCGAATAGCC ATAATCTGAGGTCGTTCTTGTGGGTTGGGGTCGTGCTGATTGTGGTCGCGGCGGTTTTCTGGCTGTGCTCTCTGGATAAAGGTTCTTCTTCTCCGGCGTC GGCGAGAGTTCCGGTGGTCGGAAGGGTTCATTTCGGGTCGTTGAGGTCGAGTAAGGTGTTGGCGGCGGTTGTTAAGTCGTTTAGGATTATTAATTTGGCT GGTCCTTACACTACGAAGTCTACTATATTAAGTCACTGA
AA sequence Show only first row Show all	>Lus10033668 pacid=23143312 polypeptide=Lus10033668 locus=Lus10033668.g ID=Lus10033668.BGIv1.0 annot-version=v1.0 MNSLDATNEEQNLVPIPFCIFKIPPQHISPASKPHHFSPQVISMGPYHHSRHDLLPMQPFKLSLATTGALMITNNFRPPPSTRSIPDIVRKLEPLAPEIR QCYDKELSVDDAALAEIVAVDGAFLVEVLCFNDGNLPCFSNRRVFLGKEARRRIGIGFFRDVMMVENQIPIFALREIVPKGFDGRLCSGLVRFCQKLSPL EMNSTYPVPELDDAEPLHLLDLLYNLILLKFPDDPDTKSTSTERFLESIYHLQHPLILILLYPVKNLILIIPRILSAIPILRTLIDLNVHKIEAPTISSA SELIRAGVRFRPSVGGSVRSISFKARTLNFPRFVWHPSSEVVFRNLVAYESMAKKSEGDLILAQYGKLMDGLIRTKDDVEVLREAGIVVCSEDDDGIGEF VGGLFGGIGGSVELKDKEIVETVKDLRIFHANSHNLRSFLWVGVVLIVVAAVFWLCSLDKGSSSPASARVPVVGRVHFGSLRSSKVLAAVVKSFRIINLA GPYTTKSTILSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	0	1
AT3G21790			UDP-Glycosyltransferase superf...		Lus10036087 [exp]	2.0	0.7741
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	7.4	0.7848
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10018787 [exp]	14.1	0.7561
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	24.0	0.7431
					Lus10016819 [exp]	25.0	0.7550
AT5G66930			unknown protein		Lus10000838 [exp]	25.7	0.7384
AT2G15760			Protein of unknown function (D...		Lus10012069 [exp]	31.7	0.7007
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	32.8	0.7448
					Lus10041755 [exp]	32.9	0.7222
AT5G66740			Protein of unknown function (D...		Lus10014323 [exp]	33.2	0.7462

Compare expression of checked genes

Lus10033668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.