Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03750 1138 / 0 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT3G19210 273 / 3e-78 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT3G54280 250 / 1e-68 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT5G63950 244 / 1e-67 CHR24 chromatin remodeling 24 (.1) AT4G31900 236 / 1e-64 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G66750 222 / 3e-61 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G44980 215 / 2e-58 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G44800 213 / 1e-56 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G28290 210 / 1e-55 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G02090 201 / 7e-54 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017712 [exp] 263 / 1e-82 AT1G03750 244 / 2e-76 CHROMATIN REMODELING 9, switch 2 (.1) Lus10014047 [exp] 253 / 5e-71 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 253 / 5e-71 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10015690 [exp] 253 / 2e-70 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 252 / 6e-70 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10024019 [exp] 236 / 9e-66 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041735 [exp] 233 / 6e-65 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10013625 [exp] 230 / 4e-62 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10012798 [exp] 224 / 5e-60 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012400 [exp] 1255 / 0 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.004G141500 [exp] 254 / 1e-71 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.005G066600 [exp] 249 / 3e-69 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 249 / 3e-69 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.019G129900 [exp] 234 / 9e-66 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 234 / 2e-65 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G253400 [exp] 234 / 1e-63 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.008G195900 [exp] 233 / 6e-63 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.009G047800 [exp] 225 / 1e-60 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.014G056700 [exp] 217 / 5e-59 AT2G44980 1149 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033669 pacid=23143355 polypeptide=Lus10033669 locus=Lus10033669.g ID=Lus10033669.BGIv1.0 annot-version=v1.0 ATGCGGTTCACTTCCTTGAAATCCTTCGATGAAACCCTAATTCCCTGCTCAACATCTACATCTTCTTCTTCTTCTTCTTCATTCGCATCATCGTCTTTAC TGTTGGAGCGGAATCAATTTCCCAGGAGGCCGCCGAAGACCACCCTTGCAAAACAGCTTCGGCGGTTTGGAGTTGAAGACTTCTCTCCCGGTACTGAATC ACAGCGTTCTGTAATCAAGCAGACTCAGATCACAGAAACGCTCAAGAGTCAAACCCAGGTTGCCGATTCTCAAGAACACGGAGGAGAAGAGGAAGAAGAA GAAGAAGAAAAGGAAAAGGAAGGAGATGGCAGGAAATTCGAAGATTTTGGGAGGCCTGAATCGGGTAGGTTTCAGTTTAGTCCTATGGGACCCTTTGTGC CACTGATCCTGTCTGAAGATTCCCCTGTTGTCCAGGTGCCTGCATCTATCAATTGTAGGTTGCTTGAACATCAAAGGGAAGGAGTGAAATTCCTGTACAA GCTCTATAAAAGCAAGCATGGTGGTGTTCTTGGTGATGACATGGGACTGGGTAAGACCATCCAAACAATTGCATTTCTGGCAGCTGTTTTTGAAAAAGAT GGCGAATCCTCGGTCTCGGAGCAAGGCCATAAGGGTCCTGTATTGATAATCTGCCCCTCTTCTGTCATCCAAAACTGGGAGATTGAATTTTCCAAGTGGG CAACATTTAATGTTGCTATGTACCATGGGTCGAACCGTGATTCAGTCCTTGAGAAAGTAGAAGCTCGTGAAGTTGAGGTACTCATTACCAGTTTCGACAC TTACAGAATTCATGGTAACATCTTGTCAGAGATCAAATGGGAGGTGGTGATTGTTGACGAGGCACACAGGCTGAAAAACGAGAAGTCAAAGCTGTACACG GCGTGTTTAGAGATTAAAACACCCCGGCGTATCGGTCTGACAGGAACTGTGATGCAAAACAGGATTATGGAACTCTTCAATCTCTTTGATTGGGTTGCAC CTGGGTCGTTAGGGACTCGGGAACACTTCCGAGATTACTACGATGAACCTCTGAAACATGGCCAGAGGTCAACAGCTCCGGAAAGATTTGTTAAGATTGC TGATGAGCGGAAAGAGCACTTAGTAACAGTCCTTCGGACATACATGCTTAGAAGGACAAAAGAAGAGACCATTGGTCATATGATGATGGGGAAGGAAGAC AATGTTGTCTTCTGTGGAATGAGTGAATTGCAGAGACGGGTTTATCAGAGAATGTTACAGCTACCAGACGTCCAGTGCCTCGTAAACAAAGACCGACCTT GTAGCTGTGGAAGTCCTCTTAAACAGGTTGAATGCTGCAAAAGAACTGTACCAGATGGGATCATTTGGCCATATCTACATAAGGATAACCCTGACGGTTG TGATTCATGTCCCTTCTGCATTGTACTTCCTTGCCTTGTCAAGCTTCAACAGATTAGCAATCACTTGGAGCTGATAAAGCCGAACCCAAGGGATGAACCA GAGAAACAAAAGAAGGATGCGGAGTTTGCCTCGGCAGTGTTTGGTCCTGATATTGAGTTGGTGGGAGGGAGTGGTGCAAGTGAGAGCTTCATGGATCTCA GTGATGTTAAGCACTGTGGAAAGATGCGGGCGTTGGAAAAGTTAATGTCCTCTTGGGCTACAAGGGGCGACAAGATTCTTCTTTTCAGTTACTCCGTTCG AATGCTGGACATACTGGAAAAGTTTCTCATACGCAAAGGCTACAGTTTTGCAAGACTCGATGGCTCCACTCCAACCAACTTGCGCCAAGCTCTGGTTGAT GATTTTAACTCGAGTCCGAGCAAACAGGTGTTTCTTATATCGACCCGTGCCGGTGGGCTTGGTCTGAATCTTGTGAGCGCAAACCGTGTGGTGATATTTG ATCCCAACTGGAATCCTGCGCAAGACTTGCAAGCCCAAGACCGATCGTTCCGATTTGGGCAGAAGCGCCATGTTGTAGTTTTTCGTCTACTCGCGGCAGG TTCGTTTGAGGAGATTGTCTATTCCCGTCAGGTGTACAAGCAGCAGCTCTCGAACATTGCCGTCTCCGGAAAAATGGAGAAGCGTTATTTCGAAGGCGTG CAGGATTGTAAAGCATTTCAAGGCGAGCTATTCGGGATCTGCAATCTGTTTCGTGATCTATCCGATAAGCTTTTCACTAGTGAAATAATTGAACAAAGCA CCAGCACGAGGCAGGAATCGTCGGCAGAAATCGGATCCCATTTTCTTTCCGAACAGTATAGGGTTGCAAGTTCTTCAAGCACTGATGATACAGATGGTCC TGGAGATCTCGAGAATCACGTTGCAGCTAGACGACCTGTGCTGGAAGAACTCGGTATCCTTTACGCTCATCGGAACGAGAAGATTGTGAATAATGGACCC ACAAGTGCAACCACCAAAGAGATGGAAGAATGCATCCCCGAGAAGAATCAACGGGTCAAGCGTAGAAGGAAACTAGACGACACAAGTGGTAAAGAGAACG GCTTGCCGGTCGAGGACTGGAAGAAGAAGCAGTATAGTCTCCTTGCTGAGTTCATGGCTATGGAAGTGCTTGAATTAAGCAAGTGGGTAATTTCAGCAAC TCATTCGGAAAGAAAAAACTTGCTTCGGCGTTTTGAGAAAAGGAAGTTCAAGCTTCCCAATGGTTGA
AA sequence Show only first row Show all	>Lus10033669 pacid=23143355 polypeptide=Lus10033669 locus=Lus10033669.g ID=Lus10033669.BGIv1.0 annot-version=v1.0 MRFTSLKSFDETLIPCSTSTSSSSSSSFASSSLLLERNQFPRRPPKTTLAKQLRRFGVEDFSPGTESQRSVIKQTQITETLKSQTQVADSQEHGGEEEEE EEEKEKEGDGRKFEDFGRPESGRFQFSPMGPFVPLILSEDSPVVQVPASINCRLLEHQREGVKFLYKLYKSKHGGVLGDDMGLGKTIQTIAFLAAVFEKD GESSVSEQGHKGPVLIICPSSVIQNWEIEFSKWATFNVAMYHGSNRDSVLEKVEAREVEVLITSFDTYRIHGNILSEIKWEVVIVDEAHRLKNEKSKLYT ACLEIKTPRRIGLTGTVMQNRIMELFNLFDWVAPGSLGTREHFRDYYDEPLKHGQRSTAPERFVKIADERKEHLVTVLRTYMLRRTKEETIGHMMMGKED NVVFCGMSELQRRVYQRMLQLPDVQCLVNKDRPCSCGSPLKQVECCKRTVPDGIIWPYLHKDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPRDEP EKQKKDAEFASAVFGPDIELVGGSGASESFMDLSDVKHCGKMRALEKLMSSWATRGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQALVD DFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSFEEIVYSRQVYKQQLSNIAVSGKMEKRYFEGV QDCKAFQGELFGICNLFRDLSDKLFTSEIIEQSTSTRQESSAEIGSHFLSEQYRVASSSSTDDTDGPGDLENHVAARRPVLEELGILYAHRNEKIVNNGP TSATTKEMEECIPEKNQRVKRRRKLDDTSGKENGLPVEDWKKKQYSLLAEFMAMEVLELSKWVISATHSERKNLLRRFEKRKFKLPNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	0	1
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	1.4	0.7728
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10017545 [exp]	8.9	0.6927
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	9.5	0.7407
AT3G61800			unknown protein		Lus10030247 [exp]	13.3	0.7317
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	23.8	0.7047
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	26.8	0.6767
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	29.9	0.7045
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	35.7	0.6553
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	35.7	0.6667
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	37.9	0.7111

Compare expression of checked genes

Lus10033669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.