Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03760 176 / 2e-52 Prefoldin chaperone subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017711 [exp] 355 / 1e-121 AT1G03760 199 / 2e-59 Prefoldin chaperone subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012500 [exp] 237 / 8e-76 AT1G03760 205 / 4e-62 Prefoldin chaperone subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10033671 pacid=23143462 polypeptide=Lus10033671 locus=Lus10033671.g ID=Lus10033671.BGIv1.0 annot-version=v1.0 ATGGGGCCAGCTAAGGGGGAAGTAACCCCATTCGCGTCACTTTTCCCTGTGGAGGATACCCACAAAGCAGTGAAGCGCGTGGAGGAGAGCATCGCAGAGA AGCACAAGGAGATTGAGCATATCAAGGAATTCATCGCTGATAACAACAGTGTTATCAACCTCGTCTCCAAACTCCCTGAGGAGCTTCACCATGACATTAT GGCAAGTGCGGATAATCTTCCCTCGTTGTGTACTAATTCCTTATCAGCTTCACCGGTTCCGTTTGGGAAAGCAGCATTCTTTCCTGGCCGGCTGCTACAC ACCAATGAGTTTGTGGTGCTACTTGGAGAAGGATACTATGCAGAAAGAACGTCGAAGCAAACTGTTGACATTTTGAAAAGGAGAGGGAAGGCTTTGGATT CTCAAGTTGAATCTCTTAAGGCCAATGTTAAGGATCTGAAAGCTGAGGCTTCCTTCTTTGACGCCACGGCTTCTGAAGCAGCTGACGGTATTGTGGAGAT AAGGGAAGACTATGTGGAGGACGATCCTGTTGAAGAACATTTGAAAGCAGCTTCCAAAGGGAAAGAAAAGAATCCCAGGCCAGATGAGAGCAAAGATACG GTTGAAGATGAGGAATATGCTCGTATGATGGCTAGGTTGGATGAGCTTGAGAAAGAAGAAGAAGAACTTGAACATGAGGATGAAGATGAAGATAAAGATG AGGATGACGAAGACGAGCCAATGGCTAATGCTGCAAGTGATGATGAGAATGAAATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAAGCAGCACAAGCACTGCACAAAATCAGACCCATTTACAGGTAACTTTTTGCTATTAA
AA sequence Show only first row Show all	>Lus10033671 pacid=23143462 polypeptide=Lus10033671 locus=Lus10033671.g ID=Lus10033671.BGIv1.0 annot-version=v1.0 MGPAKGEVTPFASLFPVEDTHKAVKRVEESIAEKHKEIEHIKEFIADNNSVINLVSKLPEELHHDIMASADNLPSLCTNSLSASPVPFGKAAFFPGRLLH TNEFVVLLGEGYYAERTSKQTVDILKRRGKALDSQVESLKANVKDLKAEASFFDATASEAADGIVEIREDYVEDDPVEEHLKAASKGKEKNPRPDESKDT VEDEEYARMMARLDELEKEEEELEHEDEDEDKDEDDEDEPMANAASDDENEIEEEEEEEEEEEEEEEEESSTSTAQNQTHLQVTFCY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03760			Prefoldin chaperone subunit fa...		Lus10033671 [exp]	0	1
AT5G38720			unknown protein		Lus10008877 [exp]	4.6	0.8491
AT1G45976		SBP1	S-ribonuclease binding protein...		Lus10001131 [exp]	5.7	0.8381
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	19.9	0.8136
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	25.3	0.8112
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	29.2	0.8328
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	41.4	0.8112
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	49.9	0.7871
AT4G33100			unknown protein		Lus10014752 [exp]	51.5	0.7814
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	57.8	0.8022
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	63.1	0.7631

Compare expression of checked genes

Lus10033671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.