Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28380 453 / 4e-159 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 365 / 7e-123 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 364 / 1e-119 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 369 / 4e-119 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 357 / 2e-116 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G49490 357 / 8e-116 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 348 / 6e-114 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 351 / 2e-113 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 334 / 4e-111 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 328 / 3e-109 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039363 [exp] 348 / 7e-115 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 348 / 2e-114 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 340 / 5e-114 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 338 / 1e-113 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 342 / 2e-111 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 334 / 2e-111 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 341 / 9e-111 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 339 / 3e-110 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 319 / 7e-106 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139200 [exp] 510 / 0 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 379 / 3e-127 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 367 / 2e-121 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 360 / 6e-120 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 352 / 1e-119 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 347 / 6e-117 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 360 / 8e-117 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 344 / 5e-114 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 351 / 8e-111 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 333 / 6e-110 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033672 pacid=23143473 polypeptide=Lus10033672 locus=Lus10033672.g ID=Lus10033672.BGIv1.0 annot-version=v1.0 ATGGCTGCTAATTCGTCTTCTATCCTCTTTCTCCTCCTACTTCTCCTCATCCTGCAACCTTACTTGTTCCACAAGGCAACGGCAAAGCATGACCACACTT CGACTAACCACCACCACCACACCCCTAAGTCTTCGTCTTCGAACCCTAGGCTGCACAATGCGTACCTTGCGTTCCAAGCATGGAAGCGTGTCATCTACTC CGACCCAACGAACGTCACTTCCAACTGGATCGGCCCTTCTGTCTGTGACTATAGTGGCGTGTACTGCACGGCAGCATTGGATGACCCCGAAATCCAAGTT GTGGCAGGAATAGACCTTAACCATGCTGACATTGCTGGATTCTTGCCTGATGAGATTGGCCTTCTTACTGACTTAGCTCTCATCCATCTAAATAGTAATA GATTTTGCGGTATCCTCCCGCAATCCTTCTCAAATTTGTCCCTGCTCTTCGAGCTTGATCTCAGTAACAACCGATTTGTTGGCCCTTTCCCTTCTGTCGT CCTCTCGCTTCCGAGCTTGAACTTCCTCGACATCAGGTATAATGAGTTTGAAGGAGCATTGCCTCCCCAGCTCTTCCAGATGGGGCTCGACGCAATTTTC GTGAACAACAACCGCTTCACAAGCTCGATATCCGGTGCTCTCAACGGAACATCCGGGGCATCAGTCTTGGTCATTGCCAACAACAAATTCGACGGTTGCT TGCCACCCACGATATCCAACTTGGCAGAGTCTCTCGAGGAGCTAGTGCTCGTAAATTCGAGCTTGTCCGGATGCTTGCCTCCTGAGGTAGGCTATCTGTA CAAGCTGAAGCTGCTTGATGTCAGCAACAACAAGCTGGTTGGTCCATTGCCATATAGCGTAGCCGGGTTGGCCCATCTGGAGGTGCTGAATTTGGAGCAC AACTTGATGACTGGGATTGTTCCTGAAGGAGTGTGCATTCTTCCCAACTTGGACAACTTCACTTTTTCTTACAACTTCTTCTGTGAGGAAGAGGGGGTTT GCTCGAATTTGACATCGAGGGGTGTCAGGTTCGACGATCGGCGGAACTGTCTTCCTGATAAGCCGCTTCAGAGGAGCAAGGAGCTTTGTAGCATCGTTGC GGAGCATCCTGTGGACTGCTTCCAACGATGTGGTTCGGTGGGGAGTGACATGTTTGGTAGCATCAATGGTGGTGCTCTACTTGTTCCTGCAGCAGCTCCT GCTTTAACTCCTAGCCCTGTTTAA
AA sequence Show only first row Show all	>Lus10033672 pacid=23143473 polypeptide=Lus10033672 locus=Lus10033672.g ID=Lus10033672.BGIv1.0 annot-version=v1.0 MAANSSSILFLLLLLLILQPYLFHKATAKHDHTSTNHHHHTPKSSSSNPRLHNAYLAFQAWKRVIYSDPTNVTSNWIGPSVCDYSGVYCTAALDDPEIQV VAGIDLNHADIAGFLPDEIGLLTDLALIHLNSNRFCGILPQSFSNLSLLFELDLSNNRFVGPFPSVVLSLPSLNFLDIRYNEFEGALPPQLFQMGLDAIF VNNNRFTSSISGALNGTSGASVLVIANNKFDGCLPPTISNLAESLEELVLVNSSLSGCLPPEVGYLYKLKLLDVSNNKLVGPLPYSVAGLAHLEVLNLEH NLMTGIVPEGVCILPNLDNFTFSYNFFCEEEGVCSNLTSRGVRFDDRRNCLPDKPLQRSKELCSIVAEHPVDCFQRCGSVGSDMFGSINGGALLVPAAAP ALTPSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	2.6	0.9841
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	2.8	0.9793
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	6.3	0.9719
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	6.7	0.9774
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	7.9	0.9751
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	8.4	0.9757
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	8.9	0.9762
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	9.8	0.9752
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	10.4	0.9719
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	11.7	0.9741

Compare expression of checked genes

Lus10033672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.