Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20635 620 / 0 ATP binding;protein kinases;protein serine/threonine kinases (.1) AT2G33560 68 / 6e-12 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G18190 60 / 2e-09 Protein kinase family protein (.1) AT3G03940 59 / 4e-09 Protein kinase family protein (.1) AT3G13670 55 / 1e-07 Protein kinase family protein (.1) AT5G62310 53 / 6e-07 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G25760 51 / 2e-06 Protein kinase family protein (.1.2) AT1G13350 50 / 2e-06 Protein kinase superfamily protein (.1.2) AT2G26980 50 / 3e-06 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G30270 49 / 5e-06 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017714 [exp] 1036 / 0 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10040947 [exp] 79 / 3e-15 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 71 / 5e-13 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 69 / 2e-12 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10014152 [exp] 59 / 5e-09 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 59 / 6e-09 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10013737 [exp] 57 / 3e-08 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 57 / 3e-08 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 57 / 4e-08 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139000 [exp] 660 / 0 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Potri.010G185500 [exp] 88 / 2e-18 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.008G071900 [exp] 79 / 2e-15 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 72 / 3e-13 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 70 / 1e-12 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.019G034500 [exp] 64 / 1e-10 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 61 / 2e-09 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 60 / 3e-09 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 55 / 1e-07 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 52 / 8e-07 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [flax] [poplar] Mad3_BUB1_I Mad3/BUB1 homology region 1 CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033673 pacid=23143367 polypeptide=Lus10033673 locus=Lus10033673.g ID=Lus10033673.BGIv1.0 annot-version=v1.0 ATGGCCATCATGTCAGCAGAATCCGGCGGCTCATTCTCCGATCGAGACCCTCTCCTCCAGTGGCTACTGTCGATAAGGAAGGCACTCGATGGCAAAGACT TCAGGCAACTTGAAGAGCTCGTTTCGAACTGTATCAGGACTTTCAAGGACGACCTCATGTATCGAGATGATCCCAGATTCCTCAAGATTTGGTTCCTCCA TTTGGAATGCAGTAGTGACTTTGAAACTGTTTTCAAAGAGATGGAGATGAGCAAGATATGCATGGAGAATTCTTTGCTTTACGAACTGTACGCGGGCTTT CTTGAAGCTAAGGAGATGTGGCTAGAAGCTCATATGGCTTATCAAATTGGCATCTTAAGGAAAGCTGAACCCCTTGAGAAGTTGAAGAATGCGCAGTTCC TTTTCTTGGACAGAATGTCTGACAGAGTAAAGGCTTGCTCAGTGAAAAAGGTTGATGTTGGAGACTCCAGTCAGTCAGAAAACTGCATTAATCCTTGGTC AGCGTCCACCATAGAAAATTTGATGAAGAAGATACAACCCTCACTTGCAAAATATGATGGCTATCATCCAAGCAATAAAGCCTACTCTGGGAAGGTGGAA TTGTCTTCGCTTCGAAGTTCATCAAGGAATAAGATGGTGGAGCTACGTAAAAGGAAGTACCAAATCAAGGGCTTTGCCGGTGAAGGTGCTTTTGCTCAAG TATTTAAAGCACATGATAGCAGTAACCCTGATGAAATCATTGCACTAAAGATACAAACTCCACCATTTCCTTGGGAATTTTACATATATCGTCAACTTGA TCAGCGGATCCCTGTCTGGCAAAGGCCATGCTATGGGTTTGCTCAACGGATGCATTTGTACTCCGATTACAGCATACTTGTTTGCGACTTCCTATCCCAT GGGACACTTCACGATGTGATAAATTCCTACGTGGTTATTGGCAAAACCATGGAGGAAGTGCTGTGTATTTATTACACCGTAGAGATGTTATACATGCTAG AAACTTTGCATGATGTTGGCCTTATTCATGGAGATTTCAAGCCTGATAACCTTGTTCTTCGCCGTACCAGAGATGAGCTTAAAGAAGATGAGTATATGCA ACAAGATAGCCCATGGCGTGAACAGGGTCTCTGTCTGATAGACTGGGGAAGGGCGATAGATCTGCATCTTTTTCCAAGCAACATCGAGTTTGAAGGAACC TGCCTGACTTCTGGCTTTCGTTGTGTGGAGATGCAGCAGAACAAACGCTGGAAATGCCAGGCAAGTGCTGACTCGTATAACCTCTGTGTCGTTGTACATA CACTGCTACATGGATCCTACATGGAGATCGAAACGAAACACACTTCCGATGCAGGCGACATTTACATGCCTAAAACACCTTTCAAAAGGTATTGGAACTA CAAATTATGGGAGAAGCTGTTTAAGAAGCTACTGAACAATGCCCCTCATGACGACAAGATGTTACTCTGCAATTTGAGGGTGGAGTTTCAAGAATACCTT TGCACCGATCCCCAGTTATTAAGGAAGCTAAAGGAATTGCTGACAAAGCAGAGGCTCTCCTTGTGTTCTTCATAG
AA sequence Show only first row Show all	>Lus10033673 pacid=23143367 polypeptide=Lus10033673 locus=Lus10033673.g ID=Lus10033673.BGIv1.0 annot-version=v1.0 MAIMSAESGGSFSDRDPLLQWLLSIRKALDGKDFRQLEELVSNCIRTFKDDLMYRDDPRFLKIWFLHLECSSDFETVFKEMEMSKICMENSLLYELYAGF LEAKEMWLEAHMAYQIGILRKAEPLEKLKNAQFLFLDRMSDRVKACSVKKVDVGDSSQSENCINPWSASTIENLMKKIQPSLAKYDGYHPSNKAYSGKVE LSSLRSSSRNKMVELRKRKYQIKGFAGEGAFAQVFKAHDSSNPDEIIALKIQTPPFPWEFYIYRQLDQRIPVWQRPCYGFAQRMHLYSDYSILVCDFLSH GTLHDVINSYVVIGKTMEEVLCIYYTVEMLYMLETLHDVGLIHGDFKPDNLVLRRTRDELKEDEYMQQDSPWREQGLCLIDWGRAIDLHLFPSNIEFEGT CLTSGFRCVEMQQNKRWKCQASADSYNLCVVVHTLLHGSYMEIETKHTSDAGDIYMPKTPFKRYWNYKLWEKLFKKLLNNAPHDDKMLLCNLRVEFQEYL CTDPQLLRKLKELLTKQRLSLCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	3.2	0.8983
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	3.6	0.9346
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	9.8	0.9031
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	9.9	0.9040
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	10.1	0.9007
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	10.2	0.9026
AT3G57060			binding (.1.2)		Lus10039012 [exp]	10.7	0.9144
AT5G65120			unknown protein		Lus10016802 [exp]	11.3	0.8998
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	12.7	0.9005
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	17.9	0.8848

Compare expression of checked genes

Lus10033673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.