Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27410 68 / 2e-12 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT5G46590 68 / 2e-12 NAC ANAC096 NAC domain containing protein 96 (.1) AT5G62380 67 / 4e-12 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G65910 68 / 6e-12 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G10480 67 / 7e-12 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT1G33280 66 / 7e-12 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT2G18060 67 / 9e-12 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT4G10350 66 / 1e-11 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT4G17980 65 / 2e-11 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G15170 65 / 3e-11 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031639 [exp] 105 / 2e-24 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10008240 [exp] 104 / 2e-24 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10008200 [exp] 101 / 2e-24 ND 43 / 6e-05 Lus10010294 [exp] 103 / 1e-23 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10033699 [exp] 102 / 3e-23 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10025078 [exp] 102 / 7e-23 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10004531 [exp] 96 / 4e-21 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10024006 [exp] 97 / 5e-21 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10022965 [exp] 92 / 4e-20 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231300 [exp] 114 / 9e-28 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.015G002900 [exp] 108 / 2e-25 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G028300 [exp] 106 / 6e-25 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.014G163600 [exp] 105 / 1e-24 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.001G220500 [exp] 104 / 2e-24 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1) Potri.016G027900 [exp] 103 / 4e-24 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.017G058100 [exp] 100 / 6e-23 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G029200 [exp] 97 / 1e-22 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 97 / 4e-22 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 90 / 6e-20 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10033676 pacid=23143356 polypeptide=Lus10033676 locus=Lus10033676.g ID=Lus10033676.BGIv1.0 annot-version=v1.0 ATGAATCCTCCCCCCAACCTGGCAGAAATCGCCAAAACACTGATGCCGCCAGGGATGAAGTTCTGTCCCACGGATCAAGAAATGATAGTCAACTATCTAT ACCAGAAGATCACCGGCCGCCTGACGAGTTTCCAGACGGAGATTGTCAGGGACTGCGATCTGTACGGGGACGAGGAGCCGTGGCAGATATGGGAGCAGTA CAAGTGGTCGACGGTGGTCAACATGGAACAGAACCTGTACTTCTTCACTCGCCTCAAGACGAAGAACATTACCGGGAAGAGGATTCTCCGGCGAGTAGGG AAGAGCGACGGGACGTGGCACGGCGAGGACGCCGGGTCCAAGATCACCTGCAGCGTCGTGATCGGCGGCGAGGAAGTGTGTCTCCTAGGTTATAAGAAGC GTTTCAATTACCGGAACCCTAAGTCTGATCAGCACGGGATGTGGATTATGCACGAGTACAGTCTGCCCTGTACGGACTATGTGGTTTGCCGGCTGAAGTA TAGCAAGTCGTCTGTGGTTTCGCCGCCGTCTCCTCTGCCGCCTCCGCCTCCTCCTTCGATTGCTACTGGTGTTTCAGAAATGAGGCCGTGGATATCTCTA GTTTGCGGATCTGGGGATGAAATTTCATCAACCTGTGGAGAAACTAGTAAACAGGGTGGAAAGAATGGCCAAGTTTCGGGACAGATTGAGGTTGAGAAGG CTAAGAAGGATAATTCAGAAAAGCAGAAGAATGAAAAATCTGTTTCTGCTGCTGAGGCGAAGAATGATGAATCAACGGAAAGTGATGGCCGTAAGAAGGT GAACGAGGACAATGAAAACACTGCTTATGCTCCGGAAAAGCCTGGTTTAGAGACCGAGGGGAGTAATTCTGTGGAAAAGAATGACCTTGATGATGGAGAA ACGACTAGCGAGAAGACAGAAATTGCTTTTGCTTTCGTGGGATGTCCTGTTTTGGAGAGTAGTGATGGCAAAACGAAGGTGGAGAAGAAGAAGATTGATC CAGAAATGAATGACCAGAAGAAGGGAGTTGCTGCTTCTGCTCAGGCGAAGAATGATCTGGATAAGGAGCGGGGCAGTAGCGATTTCAAAAAGAATGCCCA GAAGAAGGTAGTTGCTGCTTCTCCTCTGGCGAAGAATGATCTGGTTAAGGAGCGGGGCAGTAGCGATTTCGAAAAGAATGTCCAAGCAAAGGGAAAGAAA ATATATGAGAAGGCGAAGAGTGGCCGAGAAATGAATGATTTCCAGAGGAAGGGAAAGGCGACTTCTGTTAATGCATTGATGGATAGACTGTTCAAGAAAG ATGAACTGGTAACTAAGCCCCTGCCAAAGACAGGGCGGGGACATGGAAAGCGACCGAGTGTGGAGCTCGAATGTACAGGGGAAGATGAGCCCACATCTAA CAAGGGTAAGAAGCCACGAGGTAGCATGGACATTCTTATCGAGGCTTTAGGGTTGCATAAGTAG
AA sequence Show only first row Show all	>Lus10033676 pacid=23143356 polypeptide=Lus10033676 locus=Lus10033676.g ID=Lus10033676.BGIv1.0 annot-version=v1.0 MNPPPNLAEIAKTLMPPGMKFCPTDQEMIVNYLYQKITGRLTSFQTEIVRDCDLYGDEEPWQIWEQYKWSTVVNMEQNLYFFTRLKTKNITGKRILRRVG KSDGTWHGEDAGSKITCSVVIGGEEVCLLGYKKRFNYRNPKSDQHGMWIMHEYSLPCTDYVVCRLKYSKSSVVSPPSPLPPPPPPSIATGVSEMRPWISL VCGSGDEISSTCGETSKQGGKNGQVSGQIEVEKAKKDNSEKQKNEKSVSAAEAKNDESTESDGRKKVNEDNENTAYAPEKPGLETEGSNSVEKNDLDDGE TTSEKTEIAFAFVGCPVLESSDGKTKVEKKKIDPEMNDQKKGVAASAQAKNDLDKERGSSDFKKNAQKKVVAASPLAKNDLVKERGSSDFEKNVQAKGKK IYEKAKSGREMNDFQRKGKATSVNALMDRLFKKDELVTKPLPKTGRGHGKRPSVELECTGEDEPTSNKGKKPRGSMDILIEALGLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	0	1
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	1.0	0.8352
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	2.4	0.8321
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	4.0	0.8272
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	6.6	0.7914
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	10.2	0.8350
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	12.0	0.7947
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	13.2	0.8054
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10009637 [exp]	13.6	0.6785
					Lus10036954 [exp]	19.7	0.7924
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10025979 [exp]	20.9	0.7030

Compare expression of checked genes

Lus10033676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.